Evidence map›Paper›PMID 25498144›Full record

ArticleMolecular cell2015

Mitochondrial ADCK3 employs an atypical protein kinase-like fold to enable coenzyme Q biosynthesis.

Jonathan A Stefely, Andrew G Reidenbach, Arne Ulbrich, Krishnadev Oruganty, Brendan J Floyd, Adam Jochem, Jaclyn M Saunders, Isabel E Johnson, Catherine E Minogue, Russell L Wrobel and 7 more

Open access · bronzeAbstract read
In one paragraph

Article in Molecular cell, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 66 papers.

0numbers the graph read from it
0cells of the map it votes in
66citing papers in PubMed
4.7field-weighted citation impact, top 4% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

66 citing papers in PubMed, 125 citations in OpenAlex.

  1. Article
  2. Article
  3. Review
  4. Mapping the Hypoxic Fitness Landscape of Retinal Pigment Epithelial Cells.International journal of molecular sciences · 2026
    Article
  5. Article
  6. Cooperative Architecture of Mitochondrial Proteome Homeostasis.medRxiv : the preprint server for health sciences · 2026
    Article
  7. Article
  8. Review
  9. Article
  10. Review
  11. Article
  12. Primary Coenzyme Q10 Deficiency-Related Ataxias.Journal of clinical medicine · 2024
    Review
  13. Review
  14. Article
  15. Article
  16. Article
  17. Coenzyme Q biochemistry and biosynthesis.Trends in biochemical sciences · 2023
    Review
  18. Article
  19. Metabolites · 2022
    Review
  20. Article

6 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

17 authors at 3 institutions in 1 country.

Jonathan A StefelyDepartment of Biochemistry, University of Wisconsin-Madison, Madison, WI 53706, USA.
Andrew G ReidenbachDepartment of Biochemistry, University of Wisconsin-Madison, Madison, WI 53706, USA.
Arne UlbrichDepartment of Chemistry, University of Wisconsin-Madison, Madison, WI 53706, USA.
Krishnadev OrugantyDepartment of Biochemistry, University of Georgia, Athens, GA 30602, USA.
Brendan J FloydDepartment of Biochemistry, University of Wisconsin-Madison, Madison, WI 53706, USA.
Adam JochemDepartment of Biochemistry, University of Wisconsin-Madison, Madison, WI 53706, USA.
Jaclyn M SaundersMitochondrial Protein Partnership, University of Wisconsin-Madison, Madison, WI 53706, USA.
Isabel E JohnsonDepartment of Biochemistry, University of Wisconsin-Madison, Madison, WI 53706, USA.
Catherine E MinogueDepartment of Chemistry, University of Wisconsin-Madison, Madison, WI 53706, USA.
Russell L WrobelMitochondrial Protein Partnership, University of Wisconsin-Madison, Madison, WI 53706, USA.
Grant E BarberDepartment of Biochemistry, University of Wisconsin-Madison, Madison, WI 53706, USA.
David LeeDepartment of Medicine and UCSD DXMS Proteomics Resource, University of California, San Diego, La Jolla, CA 92023, USA.
Sheng LiDepartment of Medicine and UCSD DXMS Proteomics Resource, University of California, San Diego, La Jolla, CA 92023, USA.
Natarajan KannanDepartment of Biochemistry, University of Georgia, Athens, GA 30602, USA.
Joshua J CoonDepartment of Chemistry, University of Wisconsin-Madison, Madison, WI 53706, USA; Department of Biomolecular Chemistry, University of Wisconsin-Madison, Madison, WI 53706, USA.
Craig A BingmanDepartment of Biochemistry, University of Wisconsin-Madison, Madison, WI 53706, USA; Mitochondrial Protein Partnership, University of Wisconsin-Madison, Madison, WI 53706, USA.
David J PagliariniDepartment of Biochemistry, University of Wisconsin-Madison, Madison, WI 53706, USA; Mitochondrial Protein Partnership, University of Wisconsin-Madison, Madison, WI 53706, USA. Electronic address: pagliarini@wisc.edu.
University of Wisconsin–Madison · USUniversity of California, San Diego · USUniversity of Georgia · US

Funding

Research Training for Computation and Informatics in Biology and MedicineT15LM007359 · NLM · UNIVERSITY OF WISCONSIN-MADISON · PI Mark W. Craven, Colin Noel Dewey · 2002 to 2026
$22.6M
INTEGRATED TRAINING FOR PHYSICIAN-SCIENTISTST32GM008692 · NIGMS · UNIVERSITY OF WISCONSIN-MADISON · PI BURKARD, MARK E · 1998 to 2020
$10.3M
Chemistry-Biology Interface Training ProgramT32GM008505 · NIGMS · UNIVERSITY OF WISCONSIN-MADISON · PI BLACKWELL, HELEN E. · 1993 to 2023
$9.8M
TRAINING IN NUTRITIONT32DK007665 · NIDDK · UNIVERSITY OF WISCONSIN-MADISON · PI GUY E GROBLEWSKI, Chi- Liang Eric Yen · 1993 to 2026
$9.2M
Partnership for High-Throughput Enabled Biology of the Mitochondrial ProteomeU01GM094622 · NIGMS · UNIVERSITY OF WISCONSIN-MADISON · PI MARKLEY, JOHN LUTE · 2010 to 2014
$7.8M
Regulation of Mitochondrial Metabolism by Post-Translational ModificationsR01DK098672 · NIDDK · WASHINGTON UNIVERSITY · PI David J Pagliarini · 2013 to 2026
$4.8M
Establishing the role of the atypical kinase ADCK3 in mitochondrial metabolismR01GM112057 · NIGMS · UNIVERSITY OF WISCONSIN-MADISON · PI PAGLIARINI, DAVID J · 2014 to 2017
$1.3M
Dissection of COQ8 Signaling with Mass Spectrometry and Chemical GeneticsF30AG043282 · NIA · UNIVERSITY OF WISCONSIN-MADISON · PI STEFELY, JONATHAN ALLAN · 2012 to 2014
$116k
NCI NIH HHS Y1-CO-1020NIA NIH HHS F30 AG043282NIA NIH HHS F30AG043282NIDDK NIH HHS R01 DK098672NIDDK NIH HHS R01DK098672NIDDK NIH HHS T32 DK007665NIGMS NIH HHS R01 GM112057NIGMS NIH HHS R01GM112057NIGMS NIH HHS T32 GM008505NIGMS NIH HHS T32GM008505NIGMS NIH HHS T32 GM008692NIGMS NIH HHS U01 GM094622NIGMS NIH HHS U01GM94622NIGMS NIH HHS Y1-GM-1104NLM NIH HHS T15 LM007359
6 · The paper itself

Abstract

The ancient UbiB protein kinase-like family is involved in isoprenoid lipid biosynthesis and is implicated in human diseases, but demonstration of UbiB kinase activity has remained elusive for unknown reasons. Here, we quantitatively define UbiB-specific sequence motifs and reveal their positions within the crystal structure of a UbiB protein, ADCK3. We find that multiple UbiB-specific features are poised to inhibit protein kinase activity, including an N-terminal domain that occupies the typical substrate binding pocket and a unique A-rich loop that limits ATP binding by establishing an unusual selectivity for ADP. A single alanine-to-glycine mutation of this loop flips this coenzyme selectivity and enables autophosphorylation but inhibits coenzyme Q biosynthesis in vivo, demonstrating functional relevance for this unique feature. Our work provides mechanistic insight into UbiB enzyme activity and establishes a molecular foundation for further investigation of how UbiB family proteins affect diseases and diverse biological pathways.

Indexed as

Amino Acid SequenceCrystallography, X-RayEscherichia coliGene ExpressionHumansMitochondriaMitochondrial ProteinsModels, MolecularMolecular Sequence DataMutationPhosphorylationProtein FoldingProtein Structure, SecondaryProtein Structure, TertiaryRecombinant ProteinsSaccharomyces cerevisiaeCOQ8A protein, humanMitochondrial ProteinsRecombinant ProteinsUbiquinone

Identifiers

PMID25498144
PMCPMC4289473
OpenAlexW2012180656

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.