Evidence map›Paper›PMID 25495341›Full record

ArticleThe Biochemical journal2015

The function of phosphatidylinositol 5-phosphate 4-kinase γ (PI5P4Kγ) explored using a specific inhibitor that targets the PI5P-binding site.

Jonathan H Clarke, Maria-Luisa Giudici, John E Burke, Roger L Williams, David J Maloney, Juan Marugan, Robin F Irvine

Open access · hybridAbstract read
In one paragraph

Article in The Biochemical journal, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 32 papers.

0numbers the graph read from it
0cells of the map it votes in
32citing papers in PubMed
3.2field-weighted citation impact, top 8% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

32 citing papers in PubMed, 44 citations in OpenAlex.

  1. Article
  2. Article
  3. Review
  4. Article
  5. Article
  6. Review
  7. Review
  8. Article
  9. Development of potent and selective degraders of PI5P4Kγ.European journal of medicinal chemistry · 2023
    Article
  10. Article
  11. Article
  12. Article
  13. Article
  14. Article
  15. Small molecules targeting endocytic uptake and recycling pathways.Frontiers in cell and developmental biology · 2023
    Review
  16. Review
  17. Article
  18. Article
  19. Article
  20. Mechanistic roles of mutant p53 governing lipid metabolism.Advances in biological regulation · 2022
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 1 institution in 1 country.

Jonathan H Clarke*Department of Pharmacology, Tennis Court Road, Cambridge CB2 1PD, U.K.
Maria-Luisa Giudici*Department of Pharmacology, Tennis Court Road, Cambridge CB2 1PD, U.K.
John E Burke†MRC Laboratory of Molecular Biology, Francis Crick Avenue, Cambridge CB2 0QH, U.K.
Roger L Williams†MRC Laboratory of Molecular Biology, Francis Crick Avenue, Cambridge CB2 0QH, U.K.
David J Maloney‡National Center for Advancing Translational Sciences, 9800 Medical Center Drive, Rockville, MD 20850, U.S.A.
Juan Marugan‡National Center for Advancing Translational Sciences, 9800 Medical Center Drive, Rockville, MD 20850, U.S.A.
Robin F Irvine*Department of Pharmacology, Tennis Court Road, Cambridge CB2 1PD, U.K.
MRC Laboratory of Molecular Biology · GB

Funding

qHTS to Identify Inhibitors of the Lipid Kinase PI5P4K gammaZIATR000202 · NCATS · NATIONAL CENTER FOR ADVANCING TRANSLATIONAL SCIENCES · PI MARUGAN, JUAN · 2015 to 2016
$341k
Biotechnology and Biological Sciences Research Council RG65394British Heart Foundation PG/11/109/29247British Heart Foundation PG11/109/29247Medical Research Council MC_U105184308Medical Research Council MR/J001120/1Medical Research Council RG64071
6 · The paper itself

Abstract

NIH-12848 (NCGC00012848-02), a putative phosphatidylinositol 5-phosphate 4-kinase γ (PI5P4Kγ) inhibitor, was explored as a tool for investigating this enigmatic, low activity, lipid kinase. PI5P4K assays in vitro showed that NIH-12848 inhibited PI5P4Kγ with an IC50 of approximately 1 μM but did not inhibit the α and β PI5P4K isoforms at concentrations up to 100 μM. A lack of inhibition of PI5P4Kγ ATPase activity suggested that NIH-12848 does not interact with the enzyme's ATP-binding site and direct exploration of binding using hydrogen-deuterium exchange (HDX)-MS (HDX-MS) revealed the putative PI5P-binding site of PI5P4Kγ to be the likely region of interaction. This was confirmed by a series of mutation experiments which led to the identification of a single PI5P4Kγ amino acid residue that can be mutated to its PI5P4Ks α and β homologue to render PI5P4Kγ resistant NIH-12848 inhibition. NIH-12848 (10 μM) was applied to cultured mouse principal kidney cortical collecting duct (mpkCCD) cells which, we show, express PI5P4Kγ that increases when the cells grow to confluence and polarize. NIH-12848 inhibited the translocation of Na⁺/K⁺-ATPase to the plasma membrane that occurs when mpkCCD cells grow to confluence and also prevented reversibly their forming of 'domes' on the culture dish. Both these NIH-12848-induced effects were mimicked by specific RNAi knockdown of PI5P4Kγ, but not that of PI5P4Ks α or β. Overall, the data reveal a probable contribution of PI5P4Kγ to the development and maintenance of epithelial cell functional polarity and show that NIH-12848 is a potentially powerful tool for exploring the cell physiology of PI5P4Ks.

Indexed as

Models, MolecularAmino Acid SubstitutionAnimalsBinding SitesCell DifferentiationCell LineCell MembraneCell PolarityDeuterium Exchange MeasurementEnzyme InhibitorsIsoenzymesKidney CortexMiceMutant ProteinsPhosphatidylinositol PhosphatesPhosphotransferases (Alcohol Group Acceptor)Enzyme InhibitorsIsoenzymesMutant ProteinsNIH-12848phosphatidylinositol 5-phosphatePhosphatidylinositol PhosphatesPhosphotransferases (Alcohol Group Acceptor)Pip4k2c protein, mouseQuinazolinesRecombinant ProteinsThiophenes

Identifiers

PMID25495341
PMCPMC4687057
OpenAlexW2328034403

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.