Evidence map›Paper›PMID 25495051›Full record

ArticleThe Plant journal : for cell and molecular biology2015

The maize brown midrib4 (bm4) gene encodes a functional folylpolyglutamate synthase.

Li Li, Sarah Hill-Skinner, Sanzhen Liu, Danielle Beuchle, Ho Man Tang, Cheng-Ting Yeh, Dan Nettleton, Patrick S Schnable

Erratum issuedOpen access · bronzeAbstract read
In one paragraph

Article in The Plant journal : for cell and molecular biology, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. An erratum has been issued. Cited by 28 papers.

0numbers the graph read from it
0cells of the map it votes in
28citing papers in PubMed
2.0field-weighted citation impact, top 14% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

28 citing papers in PubMed, 56 citations in OpenAlex.

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  14. SorghumGenes · 2021
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  15. The Sorghum (Frontiers in plant science · 2021
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  16. SilencingFrontiers in plant science · 2020
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  17. Characterization of Two NewFrontiers in plant science · 2020
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  19. Combining loss of function ofBiotechnology for biofuels · 2019
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4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

8 authors at 1 institution in 3 countries.

Li LiDepartment of Agronomy, Iowa State University, 2035 Roy J. Carver Co-Lab, Ames, IA, 50011-3650, USA; College of Agronomy, Northwest Agriculture and Forestry University, #3, Taicheng road, Yangling, Shaanxi, 712100, China.
Sarah Hill-Skinner
Sanzhen Liu
Danielle Beuchle
Ho Man Tang
Cheng-Ting Yeh
Dan Nettleton
Patrick S Schnable
Iowa State University · US

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Mutations in the brown midrib4 (bm4) gene affect the accumulation and composition of lignin in maize. Fine-mapping analysis of bm4 narrowed the candidate region to an approximately 105 kb interval on chromosome 9 containing six genes. Only one of these six genes, GRMZM2G393334, showed decreased expression in mutants. At least four of 10 Mu-induced bm4 mutant alleles contain a Mu insertion in the GRMZM2G393334 gene. Based on these results, we concluded that GRMZM2G393334 is the bm4 gene. GRMZM2G393334 encodes a putative folylpolyglutamate synthase (FPGS), which functions in one-carbon (C1) metabolism to polyglutamylate substrates of folate-dependent enzymes. Yeast complementation experiments demonstrated that expression of the maize bm4 gene in FPGS-deficient met7 yeast is able to rescue the yeast mutant phenotype, thus demonstrating that bm4 encodes a functional FPGS. Consistent with earlier studies, bm4 mutants exhibit a modest decrease in lignin concentration and an overall increase in the S:G lignin ratio relative to wild-type. Orthologs of bm4 include at least one paralogous gene in maize and various homologs in other grasses and dicots. Discovery of the gene underlying the bm4 maize phenotype illustrates a role for FPGS in lignin biosynthesis.

Indexed as

Biosynthetic PathwaysChromosome MappingGenetic Complementation TestGenome, PlantLigninMutationPeptide SynthasesSequence Analysis, RNAZea maysfolylpolyglutamate synthetaseLigninPeptide Synthasesbrown midribfolylpolyglutamate synthaseligninmethylenetetrahydrofolate reductaseZea mays

Identifiers

PMID25495051
PMCPMC4329605
OpenAlexW2098353041

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC-ND
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.