Evidence map›Paper›PMID 25491407›Full record

ArticleBiomolecular NMR assignments2015

Chemical shift assignments of mouse HOXD13 DNA binding domain bound to duplex DNA.

Matthew Turner, Yonghong Zhang, Hanqian L Carlson, H Scott Stadler, James B Ames

Abstract read
PubMed Full text at PMC Publisher
In one paragraph

Article in Biomolecular NMR assignments, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
0.4field-weighted citation impact, top 38% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed, 3 citations in OpenAlex.

  1. Article
  2. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 3 institutions in 1 country.

Matthew TurnerDepartment of Chemistry, University of California, Davis, CA, 95616, USA.
Yonghong ZhangDepartment of Chemistry, University of California, Davis, CA, 95616, USA.
Hanqian L CarlsonShriners Hospital for Children Research Department, 3101 SW Sam Jackson Park Road, Portland, OR, 97239, USA.
H Scott StadlerShriners Hospital for Children Research Department, 3101 SW Sam Jackson Park Road, Portland, OR, 97239, USA.
James B AmesDepartment of Chemistry, University of California, Davis, CA, 95616, USA. jbames@ucdavis.edu.
Shriners Hospitals for Children - Erie · USUniversity of California, Davis · USUniversity of California System · US

Funding

MEMBRANE TARGETING CALCIUM SENSORS IN VISIONR01EY012347 · NEI · UNIVERSITY OF MD BIOTECHNOLOGY INSTITUTE · PI AMES, JAMES B · 1999 to 2023
$6.9M
Functional Analysis of HOXA13 Small Molecule AntagonistsR01CA131458 · NCI · OREGON HEALTH & SCIENCE UNIVERSITY · PI STADLER, H. SCOTT · 2009 to 2013
$1.6M
NCI NIH HHS R01 CA131458NEI NIH HHS R01 EY012347
6 · The paper itself

Abstract

The homeobox gene (Hoxd13) codes for a transcription factor protein that binds to AT-rich DNA sequences and controls expression of proteins that control embryonic morphogenesis. We report NMR chemical shift assignments of mouse Hoxd13 DNA binding domain bound to an 11-residue DNA duplex (BMRB No. 25133).

Indexed as

Nuclear Magnetic Resonance, BiomolecularAmino Acid SequenceAnimalsDNAHomeodomain ProteinsMiceMolecular Sequence DataProtein Structure, SecondaryProtein Structure, TertiaryProton Magnetic Resonance SpectroscopyTranscription FactorsDNAHomeodomain ProteinsHoxd13 protein, mouseTranscription FactorsDNA binding domainDuplex DNAHomeodomainHOXD13NMR

Identifiers

PMID25491407
PMCPMC4465062
OpenAlexW1973732579

What OpenQuestion holds

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LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.