Evidence map›Paper›PMID 25491268›Full record

ArticleThe FEBS journal2015

Feedforward regulation of mRNA stability by prolonged extracellular signal-regulated kinase activity.

Takeshi Nagashima, Norihiko Inoue, Noriko Yumoto, Yuko Saeki, Shigeyuki Magi, Natalia Volinsky, Alexander Sorkin, Boris N Kholodenko, Mariko Okada-Hatakeyama

Open access · bronzeAbstract read
In one paragraph

Article in The FEBS journal, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 14 papers.

0numbers the graph read from it
0cells of the map it votes in
14citing papers in PubMed
0.7field-weighted citation impact, top 30% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

14 citing papers in PubMed, 15 citations in OpenAlex.

  1. Article
  2. Review
  3. Article
  4. Article
  5. Review
  6. Article
  7. Article
  8. Article
  9. Article
  10. Article
  11. Article
  12. Article
  13. Article
  14. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 3 institutions in 3 countries.

Takeshi NagashimaLaboratory for Integrated Cellular Systems, RIKEN Center for Integrative Medical Sciences (IMS), Tsurumi-ku, Yokohama, Kanagawa, Japan.
Norihiko Inoue
Noriko Yumoto
Yuko Saeki
Shigeyuki Magi
Natalia Volinsky
Alexander Sorkin
Boris N Kholodenko
Mariko Okada-Hatakeyama
RIKEN Center for Integrative Medical Sciences · JPUniversity College Dublin · IEUniversity of Pittsburgh · US

Funding

PATHOGENESIS OF CANCER--ROLE OF EGF RECEPTOR ENDOCYTOSISR01CA089151 · NCI · UNIVERSITY OF PITTSBURGH AT PITTSBURGH · PI SORKIN, ALEXANDER D · 2001 to 2023
$6.9M
NCI NIH HHS CA089151NCI NIH HHS R01 CA089151
6 · The paper itself

Abstract

Extracellular signal-regulated kinase (ERK) plays a central role in signal transduction networks and cell fate decisions. Sustained ERK activation induces cell differentiation, whereas transient ERK results in the proliferation of several types of cells. Sustained ERK activity stabilizes the proteins of early-response gene products. However, the effect of ERK activity duration on mRNA stability is unknown. We analyzed the quantitative relationship between the duration of four ERK activity kinetics and the mRNA expression profile in growth factor-treated cells. Time-course transcriptome analysis revealed that the cells with prolonged ERK activity generally showed sustained mRNA expression of late response genes but not early or mid genes. Selected late response genes decayed more rapidly in the presence of a specific ERK inhibitor than a general transcription inhibitor and the decay rate was not related to the number of AU-rich elements. Our results suggest that sustained ERK activity plays an important role in the lifespan of the mRNA encoded by late response genes, in addition to the previously demonstrated role in protein stabilization of early-response genes, including transcription factors regulating the transcription of mid and late genes. This double-positive regulation of ligand-induced genes, also termed feedforward regulation, is critical in cell fate decisions.

Indexed as

ButadienesCell DifferentiationDactinomycinErbB ReceptorsExtracellular Signal-Regulated MAP KinasesHumansMAP Kinase Signaling SystemMCF-7 CellsNitrilesRNA StabilitySignal TransductionButadienesDactinomycinEGFR protein, humanErbB ReceptorsExtracellular Signal-Regulated MAP KinasesNitrilesU 0126EGFRERKmRNA stabilitysignal transductiontranscriptome

Identifiers

PMID25491268
PMCPMC4334673
OpenAlexW2034141780

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.