Evidence map›Paper›PMID 25490919›Full record

ArticleThe Plant cell2014

Arabidopsis DPB3-1, a DREB2A interactor, specifically enhances heat stress-induced gene expression by forming a heat stress-specific transcriptional complex with NF-Y subunits.

Hikaru Sato, Junya Mizoi, Hidenori Tanaka, Kyonosin Maruyama, Feng Qin, Yuriko Osakabe, Kyoko Morimoto, Teppei Ohori, Kazuya Kusakabe, Maika Nagata and 2 more

Erratum issuedOpen access · greenAbstract read
In one paragraph

Article in The Plant cell, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. An erratum has been issued. Cited by 86 papers.

0numbers the graph read from it
0cells of the map it votes in
86citing papers in PubMed
13.1field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

86 citing papers in PubMed, 193 citations in OpenAlex.

  1. Review
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  7. Transcriptional gene network involved in drought stress response: application for crop breeding in the context of climate change.Philosophical transactions of the Royal Society of London. Series B, Biological sciences · 2025
    Review
  8. Article
  9. Article
  10. Review
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  13. Integrating physiological and multi-omics methods to elucidate heat stress tolerance for sustainable rice production.Physiology and molecular biology of plants : an international journal of functional plant biology · 2024
    Review
  14. Article
  15. Article
  16. Article
  17. Article
  18. The maize geneFrontiers in plant science · 2024
    Article
  19. STOP1-regulatedPlant direct · 2024
    Article
  20. Heat Stress Alleviation by Exogenous Calcium in the OrchidInternational journal of molecular sciences · 2023
    Article

26 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

12 authors at 3 institutions in 1 country.

Hikaru SatoGraduate School of Agricultural and Life Sciences, University of Tokyo, Tokyo 113-8657, Japan.
Junya MizoiGraduate School of Agricultural and Life Sciences, University of Tokyo, Tokyo 113-8657, Japan.
Hidenori TanakaGraduate School of Agricultural and Life Sciences, University of Tokyo, Tokyo 113-8657, Japan.
Kyonosin MaruyamaBiological Resources and Post-harvest Division, Japan International Research Center for Agricultural Sciences, Tsukuba 305-8686, Japan.
Feng QinBiological Resources and Post-harvest Division, Japan International Research Center for Agricultural Sciences, Tsukuba 305-8686, Japan.
Yuriko OsakabeGraduate School of Agricultural and Life Sciences, University of Tokyo, Tokyo 113-8657, Japan.
Kyoko MorimotoGraduate School of Agricultural and Life Sciences, University of Tokyo, Tokyo 113-8657, Japan.
Teppei OhoriGraduate School of Agricultural and Life Sciences, University of Tokyo, Tokyo 113-8657, Japan.
Kazuya KusakabeGraduate School of Agricultural and Life Sciences, University of Tokyo, Tokyo 113-8657, Japan.
Maika NagataGraduate School of Agricultural and Life Sciences, University of Tokyo, Tokyo 113-8657, Japan.
Kazuo ShinozakiRIKEN Center for Sustainable Resource Science, Tsurumi-ku, Yokohama 230-0045, Japan.
Kazuko Yamaguchi-ShinozakiGraduate School of Agricultural and Life Sciences, University of Tokyo, Tokyo 113-8657, Japan akys@mail.ecc.u-tokyo.ac.jp.ORCID http://orcid.org/0000-0002-0249-8258
The University of Tokyo · JPJapan International Research Center for Agricultural Sciences · JPRIKEN Center for Sustainable Resource Science · JP

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

DEHYDRATION-RESPONSIVE ELEMENT BINDING PROTEIN2A (DREB2A) is a key transcription factor for drought and heat stress tolerance in Arabidopsis thaliana. DREB2A induces the expression of dehydration- and heat stress-inducible genes under the corresponding stress conditions. Target gene selectivity is assumed to require stress-specific posttranslational regulation, but the mechanisms of this process are not yet understood. Here, we identified DNA POLYMERASE II SUBUNIT B3-1 (DPB3-1), which was previously annotated as NUCLEAR FACTOR Y, SUBUNIT C10 (NF-YC10), as a DREB2A interactor, through a yeast two-hybrid screen. The overexpression of DPB3-1 in Arabidopsis enhanced the expression of a subset of heat stress-inducible DREB2A target genes but did not affect dehydration-inducible genes. Similarly, the depletion of DPB3-1 expression resulted in reduced expression of heat stress-inducible genes. Interaction and expression pattern analyses suggested the existence of a trimer comprising NF-YA2, NF-YB3, and DPB3-1 that could synergistically activate a promoter of the heat stress-inducible gene with DREB2A in protoplasts. These results suggest that DPB3-1 could form a transcriptional complex with NF-YA and NF-YB subunits and that the identified trimer enhances heat stress-inducible gene expression during heat stress responses in cooperation with DREB2A. We propose that the identified trimer contributes to the target gene selectivity of DREB2A under heat stress conditions.

Indexed as

Gene Expression Regulation, PlantArabidopsisArabidopsis ProteinsDNA Polymerase IIGene Knockdown TechniquesHeat-Shock ResponsePromoter Regions, GeneticProtoplastsTranscription FactorsTwo-Hybrid System TechniquesArabidopsis ProteinsDNA Polymerase IIDPB3-1 protein, ArabidopsisDREB2A protein, ArabidopsisTranscription Factors

Identifiers

PMID25490919
PMCPMC4311209
OpenAlexW2061889124

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.