Evidence map›Paper›PMID 25489790›Full record

ArticleBiochemistry2015

Molecular basis for the catalytic specificity of the CTX-M extended-spectrum β-lactamases.

Carolyn J Adamski, Ana Maria Cardenas, Nicholas G Brown, Lori B Horton, Banumathi Sankaran, B V Venkataram Prasad, Hiram F Gilbert, Timothy Palzkill

Open access · bronzeAbstract read
In one paragraph

Article in Biochemistry, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 43 papers.

0numbers the graph read from it
0cells of the map it votes in
43citing papers in PubMed
1.7field-weighted citation impact, top 19% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

43 citing papers in PubMed, 54 citations in OpenAlex.

  1. Cefdinir binding to a class A β-lactamase revealed by serial cryo-crystallography.Acta crystallographica. Section D, Structural biology · 2026
    Article
  2. Article
  3. Article
  4. Article
  5. Review
  6. Review
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  8. β-Lactamase and Macrolide Resistance Gene Carriage inOpen forum infectious diseases · 2024
    Article
  9. Network of epistatic interactions in an enzyme active site revealed by large-scale deep mutational scanning.Proceedings of the National Academy of Sciences of the United States of America · 2024
    Article
  10. Review
  11. Article
  12. Article
  13. Article
  14. Article
  15. Article
  16. Review
  17. Article
  18. Article
  19. Multidrug-Resistant CTX-M and CMY-2 ProducingMicrobial drug resistance (Larchmont, N.Y.) · 2020
    Article
  20. Antimicrobial agents and chemotherapy · 2020
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 2 institutions in 1 country.

Carolyn J AdamskiVerna and Marrs McLean Department of Biochemistry and Molecular Biology, ‡Department of Molecular Virology and Microbiology, ∥Department of Pharmacology, Baylor College of Medicine , One Baylor Plaza, Houston, Texas 77030, United States.
Ana Maria Cardenas
Nicholas G Brown
Lori B Horton
Banumathi Sankaran
B V Venkataram Prasad
Hiram F Gilbert
Timothy Palzkill
Baylor College of Medicine · USLawrence Berkeley National Laboratory · US

Funding

Initiative for Maximizing Student Development (IMSD) ProgramR25GM056929 · NIGMS · BAYLOR COLLEGE OF MEDICINE · PI PEREIRA, FRED A · 1998 to 2023
$12.4M
HOUSTON AREA MOLECULAR BIOPHYSICS TRAINING PROGRAMT32GM008280 · NIGMS · RICE UNIVERSITY · PI WENSEL, THEODORE G · 1988 to 2023
$8.0M
BETA-LACTAMASE MUTATIONS IN ANTIBIOTIC RESISTANCER01AI032956 · NIAID · BAYLOR COLLEGE OF MEDICINE · PI Timothy Palzkill · 1992 to 2026
$6.5M
Beta Lactamase Mutations in Antibiotic ResistanceR37AI032956 · NIAID · BAYLOR COLLEGE OF MEDICINE · PI PALZKILL, TIMOTHY · 2001 to 2010
$3.3M
Training in Pharmacoinformatics(RMI)T90DK070109 · NIDDK · UNIVERSITY OF TEXAS HLTH SCI CTR HOUSTON · PI STANCEL, GEORGE M. · 2004 to 2008
$1.6M
Training in Biomedical Discovery from Large Scale Data SetsR90DA023418 · NIDA · BAYLOR COLLEGE OF MEDICINE · PI PALZKILL, TIMOTHY · 2006 to 2009
$582k
Beta Lactamase Mutations in Antibiotic ResistanceR56AI032956 · NIAID · BAYLOR COLLEGE OF MEDICINE · PI PALZKILL, TIMOTHY · 2016 to 2016
$394k
Howard Hughes Medical InstituteNIAID NIH HHS AI32956NIAID NIH HHS R01 AI032956NIDA NIH HHS 1 R90 DA023418-03NIDDK NIH HHS T90 DK070109-05NIGMS NIH HHS R25 GM056929NIGMS NIH HHS T32 GM008280
6 · The paper itself

Abstract

Extended-spectrum β-lactamases (ESBLs) pose a threat to public health because of their ability to confer resistance to extended-spectrum cephalosporins such as cefotaxime. The CTX-M β-lactamases are the most widespread ESBL enzymes among antibiotic resistant bacteria. Many of the active site residues are conserved between the CTX-M family and non-ESBL β-lactamases such as TEM-1, but the residues Ser237 and Arg276 are specific to the CTX-M family, suggesting that they may help to define the increased specificity for cefotaxime hydrolysis. To test this hypothesis, site-directed mutagenesis of these positions was performed in the CTX-M-14 β-lactamase. Substitutions of Ser237 and Arg276 with their TEM-1 counterparts, Ala237 and Asn276, had a modest effect on cefotaxime hydrolysis, as did removal of the Arg276 side chain in an R276A mutant. The S237A:R276N and S237A:R276A double mutants, however, exhibited 29- and 14-fold losses in catalytic efficiency for cefotaxime hydrolysis, respectively, while the catalytic efficiency for benzylpenicillin hydrolysis was unchanged. Therefore, together, the Ser237 and Arg276 residues are important contributors to the cefotaximase substrate profile of the enzyme. High-resolution crystal structures of the CTX-M-14 S70G, S70G:S237A, and S70G:S237A:R276A variants alone and in complex with cefotaxime show that residues Ser237 and Arg276 in the wild-type enzyme promote the expansion of the active site to accommodate cefotaxime and favor a conformation of cefotaxime that allows optimal contacts between the enzyme and substrate. The conservation of these residues, linked to their effects on structure and catalysis, imply that their coevolution is an important specificity determinant in the CTX-M family.

Indexed as

Drug Resistance, MicrobialAmino Acid SubstitutionAnti-Bacterial Agentsbeta-LactamasesCefotaximeCrystallography, X-RayEscherichia coliEscherichia coli InfectionsHumansHydrolysisModels, MolecularMutagenesis, Site-DirectedAnti-Bacterial Agentsbeta-lactamase CTX-M-14beta-LactamasesCefotaxime

Identifiers

PMID25489790
PMCPMC4303298
OpenAlexW1993218818

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.