Evidence map›Paper›PMID 25489753›Full record

ArticleJournal of visualized experiments : JoVE2014

Methods to assess subcellular compartments of muscle in C. elegans.

Christopher J Gaffney, Joseph J Bass, Thomas F Barratt, Nathaniel J Szewczyk

Open access · greenAbstract readVideo-Audio Media
In one paragraph

Article in Journal of visualized experiments : JoVE, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 19 papers.

0numbers the graph read from it
0cells of the map it votes in
19citing papers in PubMed
0.1field-weighted citation impact, top 54% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

19 citing papers in PubMed, 30 citations in OpenAlex.

  1. Article
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  5. Frontiers in nutrition · 2022
    Article
  6. High-Dose Irradiation Inhibits Motility and Induces Autophagy inInternational journal of molecular sciences · 2021
    Article
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  8. Mitochondrial hydrogen sulfide supplementation improves health in theProceedings of the National Academy of Sciences of the United States of America · 2021
    Article
  9. Article
  10. Article
  11. Perfluorooctane Sulfonate (PFOS) Produces Dopaminergic Neuropathology in Caenorhabditis elegans.Toxicological sciences : an official journal of the Society of Toxicology · 2019
    Article
  12. Article
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  15. Article
  16. Article
  17. Journal of fungi (Basel, Switzerland) · 2018
    Review
  18. Article
  19. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 1 institution in 1 country.

Christopher J GaffneyMRC/ARUK Centre for Musculoskeletal Ageing Research, University of Nottingham.
Joseph J BassMRC/ARUK Centre for Musculoskeletal Ageing Research, University of Nottingham.
Thomas F BarrattMRC/ARUK Centre for Musculoskeletal Ageing Research, University of Nottingham.
Nathaniel J SzewczykMRC/ARUK Centre for Musculoskeletal Ageing Research, University of Nottingham; nate@alumni.cmu.edu.
University of Nottingham · GB

Funding

Gene Networks Regulating Muscle Protein DegradationR01AR054342 · NIAMS · UNIVERSITY OF NOTTINGHAM · PI SZEWCZYK, NATHANIEL J. · 2007 to 2010
$902k
Medical Research Council J500495NIAMS NIH HHS AR-054342NIAMS NIH HHS R01 AR054342
6 · The paper itself

Abstract

Muscle is a dynamic tissue that responds to changes in nutrition, exercise, and disease state. The loss of muscle mass and function with disease and age are significant public health burdens. We currently understand little about the genetic regulation of muscle health with disease or age. The nematode C. elegans is an established model for understanding the genomic regulation of biological processes of interest. This worm's body wall muscles display a large degree of homology with the muscles of higher metazoan species. Since C. elegans is a transparent organism, the localization of GFP to mitochondria and sarcomeres allows visualization of these structures in vivo. Similarly, feeding animals cationic dyes, which accumulate based on the existence of a mitochondrial membrane potential, allows the assessment of mitochondrial function in vivo. These methods, as well as assessment of muscle protein homeostasis, are combined with assessment of whole animal muscle function, in the form of movement assays, to allow correlation of sub-cellular defects with functional measures of muscle performance. Thus, C. elegans provides a powerful platform with which to assess the impact of mutations, gene knockdown, and/or chemical compounds upon muscle structure and function. Lastly, as GFP, cationic dyes, and movement assays are assessed non-invasively, prospective studies of muscle structure and function can be conducted across the whole life course and this at present cannot be easily investigated in vivo in any other organism.

Indexed as

AnimalsCaenorhabditis elegansGreen Fluorescent ProteinsMuscle, SkeletalStructure-Activity RelationshipSubcellular FractionsGreen Fluorescent Proteins

Identifiers

PMID25489753
PMCPMC4354018
OpenAlexW2035800002

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC-ND
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.