Evidence map›Paper›PMID 25489729›Full record

ArticleThe ISME journal2015

Populations, not clones, are the unit of vibrio pathogenesis in naturally infected oysters.

Astrid Lemire, David Goudenège, Typhaine Versigny, Bruno Petton, Alexandra Calteau, Yannick Labreuche, Frédérique Le Roux

Open access · bronzeAbstract read
In one paragraph

Article in The ISME journal, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 51 papers.

0numbers the graph read from it
0cells of the map it votes in
51citing papers in PubMed
6.3field-weighted citation impact, top 3% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

51 citing papers in PubMed, 160 citations in OpenAlex.

  1. Article
  2. Article
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  4. The ecology and evolution of microbial immune systems: a look on the wild vibrio side.Philosophical transactions of the Royal Society of London. Series B, Biological sciences · 2025
    Review
  5. Article
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  8. Article
  9. Review
  10. Article
  11. Cooperation and cheating orchestrate Vibrio assemblages and polymicrobial synergy in oysters infected with OsHV-1 virus.Proceedings of the National Academy of Sciences of the United States of America · 2023
    Article
  12. Microbial genomics · 2023
    Article
  13. Article
  14. Article
  15. Phylogenomic diversity ofMicrobial genomics · 2022
    Article
  16. Article
  17. Article
  18. Article
  19. Article
  20. International journal of systematic and evolutionary microbiology · 2021
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 2 institutions in 1 country.

Astrid Lemire1] Sorbonne Universités, UPMC Univ Paris 06, UMR 8227, Integrative Biology of Marine Models, Station Biologique de Roscoff, Roscoff, France [2] Ifremer, Unité Physiologie Fonctionnelle des Organismes Marins, ZI de la Pointe du Diable, Plouzané, France [3] CNRS UMR 8227, Integrative Biology of Marine Models, Station Biologique de Roscoff, Roscoff, France.
David Goudenège1] Sorbonne Universités, UPMC Univ Paris 06, UMR 8227, Integrative Biology of Marine Models, Station Biologique de Roscoff, Roscoff, France [2] Ifremer, Unité Physiologie Fonctionnelle des Organismes Marins, ZI de la Pointe du Diable, Plouzané, France [3] CNRS UMR 8227, Integrative Biology of Marine Models, Station Biologique de Roscoff, Roscoff, France.
Typhaine Versigny1] Sorbonne Universités, UPMC Univ Paris 06, UMR 8227, Integrative Biology of Marine Models, Station Biologique de Roscoff, Roscoff, France [2] Ifremer, Unité Physiologie Fonctionnelle des Organismes Marins, ZI de la Pointe du Diable, Plouzané, France [3] CNRS UMR 8227, Integrative Biology of Marine Models, Station Biologique de Roscoff, Roscoff, France.
Bruno PettonIfremer, Unité Physiologie Fonctionnelle des Organismes Marins, ZI de la Pointe du Diable, Plouzané, France.
Alexandra Calteau1] Commissariat à l'Energie Atomique et aux Energies Alternatives (CEA), Direction des Sciences du Vivant (DSV), Institut de Génomique (IG), Genoscope, Evry, France [2] CNRS UMR 8030, Laboratoire d'Analyses Bioinformatiques en Génomique et Métabolisme (LABGeM), Evry, France.
Yannick Labreuche1] Sorbonne Universités, UPMC Univ Paris 06, UMR 8227, Integrative Biology of Marine Models, Station Biologique de Roscoff, Roscoff, France [2] Ifremer, Unité Physiologie Fonctionnelle des Organismes Marins, ZI de la Pointe du Diable, Plouzané, France [3] CNRS UMR 8227, Integrative Biology of Marine Models, Station Biologique de Roscoff, Roscoff, France.
Frédérique Le Roux1] Sorbonne Universités, UPMC Univ Paris 06, UMR 8227, Integrative Biology of Marine Models, Station Biologique de Roscoff, Roscoff, France [2] Ifremer, Unité Physiologie Fonctionnelle des Organismes Marins, ZI de la Pointe du Diable, Plouzané, France [3] CNRS UMR 8227, Integrative Biology of Marine Models, Station Biologique de Roscoff, Roscoff, France.
Centre National de la Recherche Scientifique · FRIfremer · FR

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Disease in oysters has been steadily rising over the past decade, threatening the long-term survival of commercial and natural stocks. Our understanding and management of such diseases are of critical importance as aquaculture is an important aspect of dealing with the approaching worldwide food shortage. Although some bacteria of the Vibrio genus isolated from diseased oysters have been demonstrated to be pathogenic by experimental infection, direct causality has not been established. Little is known about the dynamics of how the bacterial population hosted by oysters changes during disease progression. Combining experimental ecology, a high-throughput infection assay and genome sequencing, we show that the onset of disease in oysters is associated with progressive replacement of diverse benign colonizers by members of a phylogenetically coherent virulent population. Although the virulent population is genetically diverse, all members of that population can cause disease. Comparative genomics across virulent and nonvirulent populations identified candidate virulence factors that were clustered in population-specific genomic regions. Genetic analyses revealed that one gene for a candidate virulent factor, a putative outer membrane protein, is necessary for infection of oysters. Finally, analyses of oyster mortality following experimental infection suggest that disease onset can be facilitated by the presence of nonvirulent strains. This is a new form of polymicrobial disease, in which nonpathogenic strains contribute to increase mortality.

Indexed as

AnimalsAquacultureBacterial Outer Membrane ProteinsBase SequenceGene Expression Regulation, BacterialGenome, BacterialHost-Pathogen InteractionsOstreidaePhylogenyVibrioVirulenceBacterial Outer Membrane Proteins

Identifiers

PMID25489729
PMCPMC4478691
OpenAlexW2006917217

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.