Evidence map›Paper›PMID 25489728›Full record

ArticleThe ISME journal2015

Spatially resolved sampling reveals dynamic microbial communities in rising hydrothermal plumes across a back-arc basin.

Cody S Sheik, Karthik Anantharaman, John A Breier, Jason B Sylvan, Katrina J Edwards, Gregory J Dick

Abstract read
In one paragraph

Article in The ISME journal, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 31 papers.

0numbers the graph read from it
0cells of the map it votes in
31citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

31 citing papers in PubMed.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors.

Cody S SheikDepartment of Earth and Environmental Sciences, Ann Arbor, MI, USA.
Karthik AnantharamanDepartment of Earth and Environmental Sciences, Ann Arbor, MI, USA.
John A BreierWoods Hole Oceanographic Institution, Woods Hole, MA, USA.
Jason B SylvanDepartment of Biological Sciences, University of Southern California, Los Angeles, CA, USA.
Katrina J EdwardsDepartment of Biological Sciences, University of Southern California, Los Angeles, CA, USA.
Gregory J Dick1] Department of Earth and Environmental Sciences, Ann Arbor, MI, USA [2] Center for Computational Medicine and Bioinformatics, Ann Arbor, MI, USA [3] Department of Ecology and Evolutionary Biology, University of Michigan, Ann Arbor, MI, USA.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Within hydrothermal plumes, chemosynthetic processes and microbe-mineral interactions drive primary productivity in deep-ocean food webs and may influence transport of elements such as iron. However, the source of microorganisms in plumes and the factors governing how these communities assemble are poorly understood, in part due to lack of data from early stages of plume formation. In this study, we examined microbial community composition of rising hydrothermal plumes from five vent fields along the Eastern Lau Spreading Center. Seafloor and plume microbial communities were significantly dissimilar and shared few phylotypes. Plume communities were highly similar to each other with significant differences in community membership only between Kilo Moana and Mariner, two vents that are separated by extremes in depth, latitude and geochemistry. Systematic sampling of waters surrounding the vents revealed that species richness and phylogenetic diversity was typically highest near the vent orifice, implying mixing of microbial communities from the surrounding habitats. Above-plume background communities were primarily dominated by SAR11, SAR324 and MG-I Archaea, while SUP05, Sulfurovum, Sulfurimonas, SAR324 and Alteromonas were abundant in plume and near-bottom background communities. These results show that the ubiquitous water-column microorganisms populate plume communities, and that the composition of background seawater exerts primary influence on plume community composition, with secondary influence from geochemical and/or physical properties of vents. Many of these pervasive deep-ocean organisms are capable of lithotrophy, suggesting that they are poised to use inorganic electron donors encountered in hydrothermal plumes.

Indexed as

Hydrothermal VentsMicrobial ConsortiaWater MicrobiologyArchaeaCarbonEpsilonproteobacteriaOceans and SeasPhylogenyRNA, Ribosomal, 16SSeawaterSequence Analysis, DNATemperatureCarbonRNA, Ribosomal, 16S

Identifiers

PMID25489728
PMCPMC4438330

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.