Evidence map›Paper›PMID 25489354›Full record

ArticleCurrent protocols in bioinformatics2013

mtDNA Variation and Analysis Using Mitomap and Mitomaster.

Marie T Lott, Jeremy N Leipzig, Olga Derbeneva, H Michael Xie, Dimitra Chalkia, Mahdi Sarmady, Vincent Procaccio, Douglas C Wallace

Abstract read
In one paragraph

Article in Current protocols in bioinformatics, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 327 papers, 4 of them syntheses that pooled it.

0numbers the graph read from it
0cells of the map it votes in
327citing papers in PubMed, 4 pooled it
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

327 citing papers in PubMed, 4 syntheses or guidelines pooled it.

  1. Pooled it
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  5. Article
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  7. Mitochondrial dysfunction in urologic disease.Prostate cancer and prostatic diseases · 2026
    Review
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267 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors.

Marie T LottCenter for Mitochondrial and Epigenomic Medicine, Children's Hospital of Philadelphia Research Institute, Philadelphia, Pennsylvania, USA.
Jeremy N LeipzigCenter for Biomedical Informatics, The Children's Hospital of Philadelphia Research Institute, Philadelphia, PA; phone: 1-267-426-1375; fax: 1-215-590-5245.
Olga DerbenevaCenter for Mitochondrial and Epigenomic Medicine, Children's Hospital of Philadelphia Research Institute, Philadelphia, PA; phone: 1-267-425-3064; fax: 1-267-426-0978; work cell: 1-215-866-8121.
H Michael XieCenter for Biomedical Informatics, The Children's Hospital of Philadelphia Research Institute, Philadelphia, PA; phone: 1-267-426-0675; fax: 1-215-590-5245.
Dimitra ChalkiaCenter for Mitochondrial and Epigenomic Medicine, Children's Hospital of Philadelphia Research Institute, Philadelphia, PA.
Mahdi SarmadyCenter for Biomedical Informatics, The Children's Hospital of Philadelphia Research Institute, Philadelphia, PA; phone: 1-267-426-1373; fax: 1-215-590-5245.
Vincent ProcaccioNational Center for Neurodegenerative and Mitochondrial Diseases CHU Angers, Biochemistry and Genetics Department, Angers, France.
Douglas C WallaceCenter for Mitochondrial and Epigenomic Medicine, Children's Hospital of Philadelphia Research Institute, Philadelphia, PA; Department of Pathology and Laboratory Medicine; University of Pennsylvania, Philadelphia, PA; phone: 1-267-425-3078; fax: 1-267-426-0978.

Funding

MITOCHONDRIAL INBORN ERRORS OF METABOLISMR01NS021328 · NINDS · UNIVERSITY OF CALIFORNIA-IRVINE · PI WALLACE, DOUGLAS C · 1985 to 2017
$6.5M
Adaptive Physiology of mtDNA Longevity MutationsR01AG024373 · NIA · UNIVERSITY OF CALIFORNIA-IRVINE · PI WALLACE, DOUGLAS C · 2004 to 2008
$1.9M
Mitochondrial Diabetes & Manganic Porphyrin TreatmentR01DK073691 · NIDDK · UNIVERSITY OF CALIFORNIA-IRVINE · PI WALLACE, DOUGLAS C · 2006 to 2010
$1.5M
A Mitochondrial Etiology of AutismR01NS070298 · NINDS · UNIVERSITY OF CALIFORNIA-IRVINE · PI WALLACE, DOUGLAS C · 2009 to 2010
$1.3M
C-TERMINAL INTERACTIONS OF ALPHA1-ADRENOCEPTOR SUBTYPESR01NS021325 · NINDS · EMORY UNIVERSITY · PI MINNEMAN, KENNETH P · 1985 to 2003
$1.1M
NIA NIH HHS AG24373NIA NIH HHS R01 AG024373NIDDK NIH HHS DK73691NIDDK NIH HHS R01 DK073691NINDS NIH HHS NS070298NINDS NIH HHS NS21325NINDS NIH HHS R01 NS021325NINDS NIH HHS R01 NS021328NINDS NIH HHS R01 NS070298
6 · The paper itself

Abstract

The Mitomap database of human mitochondrial DNA (mtDNA) information has been an important compilation of mtDNA variation for researchers, clinicians and genetic counselors for the past twenty-five years. The Mitomap protocol shows how users may look up human mitochondrial gene loci, search for public mitochondrial sequences, and browse or search for reported general population nucleotide variants as well as those reported in clinical disease. Within Mitomap is the powerful sequence analysis tool for human mitochondrial DNA, Mitomaster. The Mitomaster protocol gives step-by-step instructions showing how to submit sequences to identify nucleotide variants relative to the rCRS, to determine the haplogroup, and to view species conservation. User-supplied sequences, GenBank identifiers and single nucleotide variants may be analyzed.

Indexed as

Databases, GeneticGenetic VariationSoftwareBase SequenceDNA, MitochondrialGenetic CodeHaplotypesHumansMolecular Sequence DataPolymorphism, Restriction Fragment LengthPolymorphism, Single NucleotideSequence AlignmentDNA, Mitochondrialbiological databaseGenBank sequenceshaplogroupshuman mitochondrial DNAinformation retrievalsingle nucleotide variantsspecies conservation

Identifiers

PMID25489354
PMCPMC4257604

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.