Evidence map›Paper›PMID 25487802›Full record

ArticleAntimicrobial agents and chemotherapy2015

Genomic insights into intrinsic and acquired drug resistance mechanisms in Achromobacter xylosoxidans.

Yongfei Hu, Yuying Zhu, Yanan Ma, Fei Liu, Na Lu, Xi Yang, Chunguang Luan, Yong Yi, Baoli Zhu

Abstract read
In one paragraph

Article in Antimicrobial agents and chemotherapy, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 49 papers.

0numbers the graph read from it
0cells of the map it votes in
49citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

49 citing papers in PubMed.

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  11. Acute cholangitis withWorld journal of clinical cases · 2024
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  12. Rare case of resistantSurgical neurology international · 2024
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  13. Exoproducts of the Most CommonMicrobiology spectrum · 2023
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  15. Antimicrobial agents and chemotherapy · 2023
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  16. Article
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  19. Characterization of theFrontiers in cellular and infection microbiology · 2022
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  20. Role of Efflux in Antibiotic Resistance ofFrontiers in microbiology · 2022
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors.

Yongfei HuCAS Key Laboratory of Pathogenic Microbiology and Immunology, Institute of Microbiology, Chinese Academy of Sciences, Beijing, China Beijing Key Laboratory of Microbial Drug Resistance and Resistome, Beijing, China Collaborative Innovation Center for Diagnosis and Treatment of Infectious Diseases, First Affiliated Hospital, College of Medicine, Zhejiang University, Hangzhou, China.
Yuying ZhuCAS Key Laboratory of Pathogenic Microbiology and Immunology, Institute of Microbiology, Chinese Academy of Sciences, Beijing, China Beijing Key Laboratory of Microbial Drug Resistance and Resistome, Beijing, China.
Yanan MaCAS Key Laboratory of Pathogenic Microbiology and Immunology, Institute of Microbiology, Chinese Academy of Sciences, Beijing, China Beijing Key Laboratory of Microbial Drug Resistance and Resistome, Beijing, China School of Life Science, Anhui University, Anhui, China.
Fei LiuCAS Key Laboratory of Pathogenic Microbiology and Immunology, Institute of Microbiology, Chinese Academy of Sciences, Beijing, China Beijing Key Laboratory of Microbial Drug Resistance and Resistome, Beijing, China Collaborative Innovation Center for Diagnosis and Treatment of Infectious Diseases, First Affiliated Hospital, College of Medicine, Zhejiang University, Hangzhou, China.
Na LuCAS Key Laboratory of Pathogenic Microbiology and Immunology, Institute of Microbiology, Chinese Academy of Sciences, Beijing, China Beijing Key Laboratory of Microbial Drug Resistance and Resistome, Beijing, China.
Xi YangCAS Key Laboratory of Pathogenic Microbiology and Immunology, Institute of Microbiology, Chinese Academy of Sciences, Beijing, China Beijing Key Laboratory of Microbial Drug Resistance and Resistome, Beijing, China.
Chunguang LuanCAS Key Laboratory of Pathogenic Microbiology and Immunology, Institute of Microbiology, Chinese Academy of Sciences, Beijing, China Beijing Key Laboratory of Microbial Drug Resistance and Resistome, Beijing, China.
Yong Yi306th Hospital of PLA, Beijing, China.
Baoli ZhuCAS Key Laboratory of Pathogenic Microbiology and Immunology, Institute of Microbiology, Chinese Academy of Sciences, Beijing, China Beijing Key Laboratory of Microbial Drug Resistance and Resistome, Beijing, China Collaborative Innovation Center for Diagnosis and Treatment of Infectious Diseases, First Affiliated Hospital, College of Medicine, Zhejiang University, Hangzhou, China zhubaoli@im.ac.cn.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Achromobacter xylosoxidans is an opportunistic pathogen known to be resistant to a wide range of antibiotics; however, the knowledge about the drug resistance mechanisms is limited. We used a high-throughput sequencing approach to sequence the genomes of the A. xylosoxidans type strain ATCC 27061 and a clinical isolate, A. xylosoxidans X02736, and then we used different bioinformatics tools to analyze the drug resistance genes in these bacteria. We obtained the complete genome sequence for A. xylosoxidans ATCC 27061 and the draft sequence for X02736. We predicted a total of 50 drug resistance-associated genes in the type strain, including 5 genes for β-lactamases and 17 genes for efflux pump systems; these genes are also conserved among other A. xylosoxidans genomes. In the clinical isolate, except for the conserved resistance genes, we also identified several acquired resistance genes carried by a new transposon embedded in a novel integrative and conjugative element. Our study provides new insights into the intrinsic and acquired drug resistance mechanisms in A. xylosoxidans, which will be helpful for better understanding the physiology of A. xylosoxidans and the evolution of antibiotic resistance in this bacterium.

Indexed as

Achromobacter denitrificansAnti-Bacterial AgentsDrug Resistance, Multiple, BacterialGenome, BacterialAnti-Bacterial Agents

Identifiers

PMID25487802
PMCPMC4335856

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.