Evidence map›Paper›PMID 25487337›Full record

ArticlePhilosophical transactions of the Royal Society of London. Series B, Biological sciences2015

Twenty-five thousand years of fluctuating selection on leopard complex spotting and congenital night blindness in horses.

Arne Ludwig, Monika Reissmann, Norbert Benecke, Rebecca Bellone, Edson Sandoval-Castellanos, Michael Cieslak, Gloria G Fortes, Arturo Morales-Muñiz, Michael Hofreiter, Melanie Pruvost

Open access · bronzeAbstract readHistorical Article
In one paragraph

Article in Philosophical transactions of the Royal Society of London. Series B, Biological sciences, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 13 papers.

0numbers the graph read from it
0cells of the map it votes in
13citing papers in PubMed
2.6field-weighted citation impact, top 10% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

13 citing papers in PubMed, 51 citations in OpenAlex.

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  8. Human evolution: a tale from ancient genomes.Philosophical transactions of the Royal Society of London. Series B, Biological sciences · 2017
    Review
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  13. Introduction. Ancient DNA: the first three decades.Philosophical transactions of the Royal Society of London. Series B, Biological sciences · 2015
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 9 institutions in 6 countries.

Arne LudwigDepartment of Evolutionary Genetics, Leibniz Institute for Zoo and Wildlife Research, Berlin, Germany ludwig@izw-berlin.de.
Monika ReissmannDepartment for Crop and Animal Sciences, Humboldt University Berlin, Berlin, Germany.
Norbert BeneckeDepartment of Natural Sciences, German Archaeological Institute, Berlin, Germany.
Rebecca BelloneDepartment of Population Health and Reproduction and the Veterinary Genetics Laboratory, School of Veterinary Medicine, University of California-Davis, Davis, CA 95616, USA.
Edson Sandoval-CastellanosDepartment of Bioinformatics and Genetics, Swedish Museum of Natural History, 10405 Stockholm, Sweden.
Michael CieslakDepartment of Evolutionary Genetics, Leibniz Institute for Zoo and Wildlife Research, Berlin, Germany.
Gloria G FortesDepartment of Biology, University of York, Heslington, York, UK Instituto Universitario de Xeología (IUX), A Coruña, Spain.
Arturo Morales-MuñizLaboratory of Archaeozoology, Universidad Autonoma de Madrid, Madrid, Spain.
Michael HofreiterDepartment of Biology, University of York, Heslington, York, UK Adaptive and Evolutionary Genomics, Institute for Biochemistry and Biology, Faculty of Mathematics and Natural Sciences, University of Potsdam, Karl-Liebknecht-Strasse 24-24, 14476 Potsdam, Germany.
Melanie PruvostDepartment of Evolutionary Genetics, Leibniz Institute for Zoo and Wildlife Research, Berlin, Germany Department of Natural Sciences, German Archaeological Institute, Berlin, Germany Institut Jacques Monod, UMR 7592 CNRS, Université Paris Diderot, Paris, France.
Leibniz Institute for Zoo and Wildlife Research · DEDeutsches Archäologisches Institut, Zentrale · DEHumboldt-Universität zu Berlin · DEInstitut Jacques Monod · FRMax Planck Institute for Evolutionary Anthropology · DESwedish Museum of Natural History · SEUniversidad Autónoma de Madrid · ESUniversity of California, Davis · USUniversity of York · GB

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Leopard complex spotting is inherited by the incompletely dominant locus, LP, which also causes congenital stationary night blindness in homozygous horses. We investigated an associated single nucleotide polymorphism in the TRPM1 gene in 96 archaeological bones from 31 localities from Late Pleistocene (approx. 17 000 YBP) to medieval times. The first genetic evidence of LP spotting in Europe dates back to the Pleistocene. We tested for temporal changes in the LP associated allele frequency and estimated coefficients of selection by means of approximate Bayesian computation analyses. Our results show that at least some of the observed frequency changes are congruent with shifts in artificial selection pressure for the leopard complex spotting phenotype. In early domestic horses from Kirklareli-Kanligecit (Turkey) dating to 2700-2200 BC, a remarkably high number of leopard spotted horses (six of 10 individuals) was detected including one adult homozygote. However, LP seems to have largely disappeared during the late Bronze Age, suggesting selection against this phenotype in early domestic horses. During the Iron Age, LP reappeared, probably by reintroduction into the domestic gene pool from wild animals. This picture of alternating selective regimes might explain how genetic diversity was maintained in domestic animals despite selection for specific traits at different times.

Indexed as

Genetic VariationSelection, GeneticAnimalsBase SequenceBayes TheoremDNADNA Mutational AnalysisDNA PrimersEuropeEye Diseases, HereditaryFossilsGene FrequencyGenetic Diseases, X-LinkedHair ColorHistory, AncientHistory, MedievalDNADNA PrimersTRPM Cation Channelsancient DNAcoat colourdomestication, Equuspalaeogeneticspopulation

Identifiers

PMID25487337
PMCPMC4275893
OpenAlexW2137263325

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.