Evidence map›Paper›PMID 25487327›Full record

ArticlePhilosophical transactions of the Royal Society of London. Series B, Biological sciences2015

Parallel detection of ancient pathogens via array-based DNA capture.

Kirsten I Bos, Günter Jäger, Verena J Schuenemann, Åshild J Vågene, Maria A Spyrou, Alexander Herbig, Kay Nieselt, Johannes Krause

Abstract read
In one paragraph

Article in Philosophical transactions of the Royal Society of London. Series B, Biological sciences, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 18 papers.

0numbers the graph read from it
0cells of the map it votes in
18citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

18 citing papers in PubMed.

  1. Article
  2. An Adagio for Viruses, Played Out on Ancient DNA.Genome biology and evolution · 2023
    Review
  3. Article
  4. Insights into health and disease from ancient biomolecules.Philosophical transactions of the Royal Society of London. Series B, Biological sciences · 2020
    Article
  5. Review
  6. Article
  7. Review
  8. Article
  9. Review
  10. Review
  11. Review
  12. A Robust Framework for Microbial Archaeology.Annual review of genomics and human genetics · 2017
    Review
  13. Article
  14. Review
  15. Review
  16. Article
  17. Reconstructing ancient genomes and epigenomes.Nature reviews. Genetics · 2015
    Review
  18. Introduction. Ancient DNA: the first three decades.Philosophical transactions of the Royal Society of London. Series B, Biological sciences · 2015
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors.

Kirsten I BosDepartment of Archaeological Sciences, University of Tübingen, Tübingen 72070, Germany kirsten.bos@ifu.uni-tuebingen.de.
Günter JägerCentre for Bioinformatics Tübingen (ZBIT), University of Tübingen, Tübingen 72070, Germany.
Verena J SchuenemannDepartment of Archaeological Sciences, University of Tübingen, Tübingen 72070, Germany.
Åshild J VågeneDepartment of Archaeological Sciences, University of Tübingen, Tübingen 72070, Germany.
Maria A SpyrouDepartment of Archaeological Sciences, University of Tübingen, Tübingen 72070, Germany.
Alexander HerbigDepartment of Archaeological Sciences, University of Tübingen, Tübingen 72070, Germany Centre for Bioinformatics Tübingen (ZBIT), University of Tübingen, Tübingen 72070, Germany.
Kay NieseltCentre for Bioinformatics Tübingen (ZBIT), University of Tübingen, Tübingen 72070, Germany.ORCID http://orcid.org/0000-0002-1283-7065
Johannes KrauseDepartment of Archaeological Sciences, University of Tübingen, Tübingen 72070, Germany Senckenberg Centre for Human Evolution and Palaeoenvironment, University of Tübingen, Tübingen 72070, Germany Max Planck Institute for History and Sciences, Jena 07745, Germany.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

DNA capture coupled with next generation sequencing is highly suitable for the study of ancient pathogens. Screening for pathogens can, however, be meticulous when assays are restricted to the enrichment of single organisms, which is common practice. Here, we report on an array-based DNA capture screening technique for the parallel detection of nearly 100 pathogens that could have potentially left behind molecular signatures in preserved ancient tissues. We demonstrate the sensitivity of our method through evaluation of its performance with a library known to harbour ancient Mycobacterium leprae DNA. This rapid and economical technique will be highly useful for the identification of historical diseases that are difficult to characterize based on archaeological information alone.

Indexed as

FossilsGenetic TechniquesBacteriaBone and BonesDNA, BacterialGene LibraryGenetic TestingHigh-Throughput Nucleotide SequencingMycobacterium lepraeDNA, Bacterialancient DNAarray capturepalaeopathologypathogen screening

Identifiers

PMID25487327
PMCPMC4275883

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.