Evidence map›Paper›PMID 25486535›Full record

ArticlePloS one2014

Motif-role-fingerprints: the building-blocks of motifs, clustering-coefficients and transitivities in directed networks.

Mark D McDonnell, Ömer Nebil Yaveroğlu, Brett A Schmerl, Nicolangelo Iannella, Lawrence M Ward

Abstract read
In one paragraph

Article in PloS one, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

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The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

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Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

5 citing papers in PubMed.

  1. Article
  2. Article
  3. Horizons of cybernetical physics.Philosophical transactions. Series A, Mathematical, physical, and engineering sciences · 2017
    Article
  4. PeerJ · 2017
    Article
  5. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors.

Mark D McDonnellComputational and Theoretical Neuroscience Laboratory, Institute for Telecommunications Research, University of South Australia, Mawson Lakes, South Australia, Australia; Department of Psychology and Brain Research Centre, University of British Columbia, Vancouver, British Columbia, Canada.
Ömer Nebil YaveroğluCalifornia Institute of Telecommunications and Information Technology (Calit2), University of California Irvine, Irvine, California, United States of America.
Brett A SchmerlComputational and Theoretical Neuroscience Laboratory, Institute for Telecommunications Research, University of South Australia, Mawson Lakes, South Australia, Australia.
Nicolangelo IannellaComputational and Theoretical Neuroscience Laboratory, Institute for Telecommunications Research, University of South Australia, Mawson Lakes, South Australia, Australia.
Lawrence M WardDepartment of Psychology and Brain Research Centre, University of British Columbia, Vancouver, British Columbia, Canada.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Complex networks are frequently characterized by metrics for which particular subgraphs are counted. One statistic from this category, which we refer to as motif-role fingerprints, differs from global subgraph counts in that the number of subgraphs in which each node participates is counted. As with global subgraph counts, it can be important to distinguish between motif-role fingerprints that are 'structural' (induced subgraphs) and 'functional' (partial subgraphs). Here we show mathematically that a vector of all functional motif-role fingerprints can readily be obtained from an arbitrary directed adjacency matrix, and then converted to structural motif-role fingerprints by multiplying that vector by a specific invertible conversion matrix. This result demonstrates that a unique structural motif-role fingerprint exists for any given functional motif-role fingerprint. We demonstrate a similar result for the cases of functional and structural motif-fingerprints without node roles, and global subgraph counts that form the basis of standard motif analysis. We also explicitly highlight that motif-role fingerprints are elemental to several popular metrics for quantifying the subgraph structure of directed complex networks, including motif distributions, directed clustering coefficient, and transitivity. The relationships between each of these metrics and motif-role fingerprints also suggest new subtypes of directed clustering coefficients and transitivities. Our results have potential utility in analyzing directed synaptic networks constructed from neuronal connectome data, such as in terms of centrality. Other potential applications include anomaly detection in networks, identification of similar networks and identification of similar nodes within networks. Matlab code for calculating all stated metrics following calculation of functional motif-role fingerprints is provided as S1 Matlab File.

Indexed as

AlgorithmsGene Regulatory NetworksModels, BiologicalNeural PathwaysProtein Interaction MappingAnimalsCaenorhabditis elegansCluster AnalysisComputational BiologyComputer SimulationNeurons

Identifiers

PMID25486535
PMCPMC4259349

What OpenQuestion holds

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LicenceCC BY
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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.