Evidence map›Paper›PMID 25486407›Full record

ArticlePloS one2014

The timing of Timezyme diversification in vertebrates.

Damien Cazaméa-Catalan, Laurence Besseau, Jack Falcón, Elodie Magnanou

Abstract read
In one paragraph

Article in PloS one, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 14 papers.

0numbers the graph read from it
0cells of the map it votes in
14citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

14 citing papers in PubMed.

  1. Article
  2. Review
  3. Article
  4. Effects of a temperature rise on melatonin and thyroid hormones during smoltification of Atlantic salmon, Salmo salar.Journal of comparative physiology. B, Biochemical, systemic, and environmental physiology · 2020
    Article
  5. Article
  6. Article
  7. Review
  8. Review
  9. Rhythms in the endocrine system of fish: a review.Journal of comparative physiology. B, Biochemical, systemic, and environmental physiology · 2017
    Review
  10. Article
  11. Article
  12. Review
  13. Article
  14. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors.

Damien Cazaméa-CatalanSorbonne Universités, UPMC Univ Paris 06, UMR 7232, BIOM Biologie Intégrative des Organismes Marins, Observatoire Océanologique, Banyuls/Mer, France; CNRS, UMR 7232, BIOM Biologie Intégrative des Organismes Marins, Observatoire Océanologique, Banyuls/Mer, France.
Laurence BesseauSorbonne Universités, UPMC Univ Paris 06, UMR 7232, BIOM Biologie Intégrative des Organismes Marins, Observatoire Océanologique, Banyuls/Mer, France; CNRS, UMR 7232, BIOM Biologie Intégrative des Organismes Marins, Observatoire Océanologique, Banyuls/Mer, France.
Jack FalcónSorbonne Universités, UPMC Univ Paris 06, UMR 7232, BIOM Biologie Intégrative des Organismes Marins, Observatoire Océanologique, Banyuls/Mer, France; CNRS, UMR 7232, BIOM Biologie Intégrative des Organismes Marins, Observatoire Océanologique, Banyuls/Mer, France.
Elodie MagnanouSorbonne Universités, UPMC Univ Paris 06, UMR 7232, BIOM Biologie Intégrative des Organismes Marins, Observatoire Océanologique, Banyuls/Mer, France; CNRS, UMR 7232, BIOM Biologie Intégrative des Organismes Marins, Observatoire Océanologique, Banyuls/Mer, France.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

All biological functions in vertebrates are synchronized with daily and seasonal changes in the environment by the time keeping hormone melatonin. Its nocturnal surge is primarily due to the rhythmic activity of the arylalkylamine N-acetyl transferase AANAT, which thus became the focus of many investigations regarding its evolution and function. Various vertebrate isoforms have been reported from cartilaginous fish to mammals but their origin has not been clearly established. Using phylogeny and synteny, we took advantage of the increasing number of available genomes in order to test whether the various rounds of vertebrate whole genome duplications were responsible for the diversification of AANAT. We highlight a gene secondary loss of the AANAT2 in the Sarcopterygii, revealing for the first time that the AAANAT1/2 duplication occurred before the divergence between Actinopterygii (bony fish) and Sarcopterygii (tetrapods, lobe-finned fish, and lungfish). We hypothesize the teleost-specific whole genome duplication (WDG) generated the appearance of the AANAT1a/1b and the AANAT2/2'paralogs, the 2' isoform being rapidly lost in the teleost common ancestor (ray-finned fish). We also demonstrate the secondary loss of the AANAT1a in a Paracantopterygii (Atlantic cod) and of the 1b in some Ostariophysi (zebrafish and cave fish). Salmonids present an even more diverse set of AANATs that may be due to their specific WGD followed by secondary losses. We propose that vertebrate AANAT diversity resulted from 3 rounds of WGD followed by previously uncharacterized secondary losses. Extant isoforms show subfunctionalized localizations, enzyme activities and affinities that have increased with time since their emergence.

Indexed as

AnimalsArylalkylamine N-AcetyltransferaseCluster AnalysisEvolution, MolecularHumansIsoenzymesPhylogenySyntenyVertebratesArylalkylamine N-AcetyltransferaseIsoenzymes

Identifiers

PMID25486407
PMCPMC4259306

What OpenQuestion holds

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LicenceCC BY
Read underepoch 390

Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.