Evidence map›Paper›PMID 25486049›Full record

ReviewPrion2014

Modulation of efficiency of translation termination in Saccharomyces cerevisiae.

Anton A Nizhnikov, Kirill S Antonets, Sergey G Inge-Vechtomov, Irina L Derkatch

Open access · bronzeAbstract readReview
In one paragraph

Review in Prion, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 6 papers.

0numbers the graph read from it
0cells of the map it votes in
6citing papers in PubMed
1.1field-weighted citation impact, top 24% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

6 citing papers in PubMed, 17 citations in OpenAlex.

  1. The three faces of Sup35.Yeast (Chichester, England) · 2019
    Review
  2. Review
  3. Prions, Chaperones, and Proteostasis in Yeast.Cold Spring Harbor perspectives in biology · 2017
    Review
  4. Review
  5. Review
  6. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 2 institutions in 2 countries.

Anton A Nizhnikova Department of Genetics and Biotechnology ; St. Petersburg State University ; St. Petersburg , Russia.
Kirill S Antonets
Sergey G Inge-Vechtomov
Irina L Derkatch
St Petersburg University · RUColumbia University · US

Funding

Investigation of the Establishment of the Prion StateR01GM070934 · NIGMS · NEW YORK UNIVERSITY SCHOOL OF MEDICINE · PI DERKATCH, IRINA L · 2006 to 2010
$1.3M
NIGMS NIH HHS 7 R01 GM070934-06
6 · The paper itself

Abstract

Nonsense suppression is a readthrough of premature termination codons. It typically occurs either due to the recognition of stop codons by tRNAs with mutant anticodons, or due to a decrease in the fidelity of translation termination. In the latter case, suppressors usually promote the readthrough of different types of nonsense codons and are thus called omnipotent nonsense suppressors. Omnipotent nonsense suppressors were identified in yeast Saccharomyces cerevisiae in 1960s, and most of subsequent studies were performed in this model organism. Initially, omnipotent suppressors were localized by genetic analysis to different protein- and RNA-encoding genes, mostly the components of translational machinery. Later, nonsense suppression was found to be caused not only by genomic mutations, but also by epigenetic elements, prions. Prions are self-perpetuating protein conformations usually manifested by infectious protein aggregates. Modulation of translational accuracy by prions reflects changes in the activity of their structural proteins involved in different aspects of protein synthesis. Overall, nonsense suppression can be seen as a "phenotypic mirror" of events affecting the accuracy of the translational machine. However, the range of proteins participating in the modulation of translation termination fidelity is not fully elucidated. Recently, the list has been expanded significantly by findings that revealed a number of weak genetic and epigenetic nonsense suppressors, the effect of which can be detected only in specific genetic backgrounds. This review summarizes the data on the nonsense suppressors decreasing the fidelity of translation termination in S. cerevisiae, and discusses the functional significance of the modulation of translational accuracy.

Indexed as

Peptide Chain Termination, TranslationalGene Regulatory NetworksGenes, FungalGenes, SuppressorPeptide Termination FactorsPhenotypeSaccharomyces cerevisiaeSaccharomyces cerevisiae ProteinsPeptide Termination FactorsSaccharomyces cerevisiae ProteinsamyloideEF, eukaryotic translation elongation factoreRF, eukaryotic translation release factorG418, geneticin, aminoglycoside antibioticNMD, Nonsense-Mediated Decaynonsense suppressionORF, open reading frameprionribosomeSNM, suppressor of nonsense mutationSUP35SUP45translationtranslation terminationt-SNARE, (target membrane) soluble N-ethylmaleimide attachment protein receptor proteinyeast

Identifiers

PMID25486049
PMCPMC4601251
OpenAlexW1546312687

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.