Evidence map›Paper›PMID 25484093›Full record

ArticleAutophagy2014

Acidocalcisome is required for autophagy in Trypanosoma brucei.

Feng-Jun Li, Cynthia Y He

Open access · bronzeAbstract read
In one paragraph

Article in Autophagy, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 32 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
32citing papers in PubMed, 1 pooled it
4.1field-weighted citation impact, top 6% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

32 citing papers in PubMed, 1 synthesis or guideline pooled it, 53 citations in OpenAlex.

  1. Guideline
  2. Article
  3. Article
  4. Article
  5. Article
  6. Review
  7. Review
  8. Article
  9. Article
  10. New insights into the role of acidocalcisomes in trypanosomatids.The Journal of eukaryotic microbiology · 2022
    Review
  11. Photosynthetic and ultrastructural responses of the chlorophyte Lobosphaera to the stress caused by a high exogenic phosphate concentration.Photochemical & photobiological sciences : Official journal of the European Photochemistry Association and the European Society for Photobiology · 2022
    Article
  12. Review
  13. Review
  14. Article
  15. Article
  16. Article
  17. Article
  18. Ethanolic Extract of the FungusFrontiers in cellular and infection microbiology · 2020
    Article
  19. Review
  20. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

2 authors at 1 institution in 1 country.

Feng-Jun Lia Department of Biological Sciences ; National University of Singapore ; Singapore.
Cynthia Y He
National University of Singapore · SG

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Lysosomes play important roles in autophagy, not only in autophagosome degradation, but also in autophagy initiation. In Trypanosoma brucei, an early divergent protozoan parasite, we discovered a previously unappreciated function of the acidocalcisome, a lysosome-related organelle characterized by acidic pH and large content of Ca(2+) and polyphosphates, in autophagy regulation. Starvation- and chemical-induced autophagy is accompanied with acidocalcisome acidification, and blocking the acidification completely inhibits autophagosome formation. Blocking acidocalcisome biogenesis by depleting the adaptor protein-3 complex, which does not affect lysosome biogenesis or function, also inhibits autophagy. Overall, our results support the role of the acidocalcisome, a conserved organelle from bacteria to human, as a relevant regulator in autophagy.

Indexed as

AutophagyCalciumChloroquineGene Expression RegulationHumansHydrogen-Ion ConcentrationLysosomesMacrolidesMicroscopy, FluorescenceMonensinOrganellesPhagosomesPhosphatesProtozoan ProteinsTrypanosoma brucei bruceibafilomycin A1CalciumChloroquineMacrolidesMonensinPhosphatesProtozoan ProteinsacidityacidocalcisomeAO, acridine orangeAP-3, adaptor protein-3ATG, autophagy-relatedautophagyBafA1, bafilomycin A1BODIPY-CQ, BODIPY-chloroquinecoumarin-CQ, coumarin-chloroquineCQ, chloroquineDAPI, 4′, 6-diamidino-2-phenylindolelysosome-related organelleMTORC1, mechanistic target of rapamycin complex 1polyP, polyphosphatePPi, pyrophosphateprotozoan parasitePtdIns3K, phosphatidylinositol 3-kinasePtdIns3P, phosphatidylinositol 3-phosphateRNAi, RNA interferenceT. brucei, Trypanosoma bruceiTbVMA1, the subunit A of V-H+-ATPase in Trypanosoma bruceiTbVP1, vacuolar pyrophosphatase in Trypanosoma bruceiTbVPH1, the α, subunit of V-H+-ATPase in Trypanosoma bruceiTbβ3, the β3 subunit of adaptor protein-3 complex in Trypanosoma bruceiTbδ, the δ, subunit of adaptor protein-3 complex in Trypanosoma bruceiTOR, target of rapamycinTrypanosoma bruceiV-H+-ATPase, vacuolar-type H+-ATPaseV-PPase, vacuolar pyrophophatase

Identifiers

PMID25484093
PMCPMC4502762
OpenAlexW2071153190

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.