Evidence map›Paper›PMID 25483965›Full record

ArticleAutophagy2014

The yeast autophagy protease Atg4 is regulated by thioredoxin.

María Esther Pérez-Pérez, Mirko Zaffagnini, Christophe H Marchand, José L Crespo, Stéphane D Lemaire

Open access · bronzeAbstract read
In one paragraph

Article in Autophagy, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 60 papers.

0numbers the graph read from it
0cells of the map it votes in
60citing papers in PubMed
5.8field-weighted citation impact, top 3% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

60 citing papers in PubMed, 112 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Review
  5. Article
  6. Article
  7. Article
  8. Article
  9. Evolutionary conservation and metabolic significance of autophagy in algae.Philosophical transactions of the Royal Society of London. Series B, Biological sciences · 2024
    Review
  10. Review
  11. Review
  12. Yeast Lsm Pro-Apoptotic Mutants Show Defects in Autophagy.International journal of molecular sciences · 2023
    Article
  13. Review
  14. Review
  15. Review
  16. Article
  17. Review
  18. Article
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 3 institutions in 4 countries.

María Esther Pérez-Péreza Centre National de la Recherche Scientifique; UMR8226; Laboratoire de Biologie Moléculaire et Cellulaire des Eucaryotes; Institut de Biologie Physico-Chimique ; Paris , France.
Mirko Zaffagnini
Christophe H Marchand
José L Crespo
Stéphane D Lemaire
Centre National de la Recherche Scientifique · FRConsejo Superior de Investigaciones Científicas · ESRedox (Norway) · NO

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Autophagy is a membrane-trafficking process whereby double-membrane vesicles called autophagosomes engulf and deliver intracellular material to the vacuole for degradation. Atg4 is a cysteine protease with an essential function in autophagosome formation. Mounting evidence suggests that reactive oxygen species may play a role in the control of autophagy and could regulate Atg4 activity but the precise mechanisms remain unclear. In this study, we showed that reactive oxygen species activate autophagy in the model yeast Saccharomyces cerevisiae and unraveled the molecular mechanism by which redox balance controls Atg4 activity. A combination of biochemical assays, redox titrations, and site-directed mutagenesis revealed that Atg4 is regulated by oxidoreduction of a single disulfide bond between Cys338 and Cys394. This disulfide has a low redox potential and is very efficiently reduced by thioredoxin, suggesting that this oxidoreductase plays an important role in Atg4 regulation. Accordingly, we found that autophagy activation by rapamycin was more pronounced in a thioredoxin mutant compared with wild-type cells. Moreover, in vivo studies indicated that Cys338 and Cys394 are required for the proper regulation of autophagosome biogenesis, since mutation of these cysteines resulted in increased recruitment of Atg8 to the phagophore assembly site. Thus, we propose that the fine-tuning of Atg4 activity depending on the intracellular redox state may regulate autophagosome formation.

Indexed as

AutophagyAutophagy-Related Protein 8 FamilyAutophagy-Related ProteinsBinding SitesCell MembraneCloning, MolecularCysteineDisulfidesGreen Fluorescent ProteinsMicrotubule-Associated ProteinsMutagenesis, Site-DirectedMutationOxidation-ReductionPhagosomesReactive Oxygen SpeciesSaccharomyces cerevisiaeAtg4 protein, S cerevisiaeATG8 protein, S cerevisiaeAutophagy-Related Protein 8 FamilyAutophagy-Related ProteinsCysteineDisulfidesGreen Fluorescent ProteinsMicrotubule-Associated ProteinsReactive Oxygen SpeciesSaccharomyces cerevisiae ProteinsThioredoxinsApe1, aminopeptidase IAsc, ascorbateAtg4ATG, autophagy-relatedautophagyCvt, cytoplasm-to-vacuole targetingDTNB, 5, 5′-dithiobis (2-nitro-benzoic acid)DTT, dithiothreitolDTTox, oxidized DTTDTTred, reduced DTTEh, redox potentialEm, midpoint redox potentialGSH, reduced glutathioneGSNO, S-nitrosoglutathioneGsr, glutathione reductaseGSSG, oxidized glutathioneIAM, iodoacetamideNEM, N-ethylmaleimidePAS, phagophore assembly sitePE, phosphatidylethanolaminephagophore assembly sitePTM, post-translational modificationrap, rapamycinredox regulationROS, reactive oxygen speciesSD, synthetic minimal mediumthioredoxinTrr1, thioredoxin reductase 1Trx1, thioredoxin 1YPD, yeast peptone dextrose

Identifiers

PMID25483965
PMCPMC4502779
OpenAlexW2101534102

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.