Evidence map›Paper›PMID 25483075›Full record

ArticleCell cycle (Georgetown, Tex.)2014

Inactivation of the budding yeast cohesin loader Scc2 alters gene expression both globally and in response to a single DNA double strand break.

Emma Lindgren, Sara Hägg, Fosco Giordano, Johan Björkegren, Lena Ström

Open access · hybridAbstract read
In one paragraph

Article in Cell cycle (Georgetown, Tex.), 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 9 papers.

0numbers the graph read from it
0cells of the map it votes in
9citing papers in PubMed
0.6field-weighted citation impact, top 33% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

9 citing papers in PubMed, 13 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Article
  5. Review
  6. Article
  7. New insights into cohesin loading.Current genetics · 2018
    Review
  8. Article
  9. The SMC loader Scc2 regulates gene expression.Cell cycle (Georgetown, Tex.) · 2015
    Article
4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

5 authors at 3 institutions in 2 countries.

Emma Lindgrena Department of Cell and Molecular Biology; Karolinska Institutet ; Stockholm , Sweden.
Sara Hägg
Fosco Giordano
Johan Björkegren
Lena Ström
Karolinska Institutet · SEIcahn School of Medicine at Mount Sinai · USUppsala University · SE

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Genome integrity is fundamental for cell survival and cell cycle progression. Important mechanisms for keeping the genome intact are proper sister chromatid segregation, correct gene regulation and efficient repair of damaged DNA. Cohesin and its DNA loader, the Scc2/4 complex have been implicated in all these cellular actions. The gene regulation role has been described in several organisms. In yeast it has been suggested that the proteins in the cohesin network would effect transcription based on its role as insulator. More recently, data are emerging indicating direct roles for gene regulation also in yeast. Here we extend these studies by investigating whether the cohesin loader Scc2 is involved in regulation of gene expression. We performed global gene expression profiling in the absence and presence of DNA damage, in wild type and Scc2 deficient G2/M arrested cells, when it is known that Scc2 is important for DNA double strand break repair and formation of damage induced cohesion. We found that not only the DNA damage specific transcriptional response is distorted after inactivation of Scc2 but also the overall transcription profile. Interestingly, these alterations did not correlate with changes in cohesin binding.

Indexed as

DNA Breaks, Double-StrandedCell Cycle ProteinsChromosomal Proteins, Non-HistoneCohesinsGene Expression RegulationSaccharomyces cerevisiaeSaccharomyces cerevisiae ProteinsSaccharomycetalesCell Cycle ProteinsChromosomal Proteins, Non-HistoneCohesinsSaccharomyces cerevisiae ProteinsSCC2 protein, S cerevisiaecohesin networkDI-cohesion, damage induced cohesionDNA double strand breakDSB DNA, double strand breakFDR, false discovery rateHO, homothallic switching endonucleasemicroarrayScc2SCC, sister chromatid cohesionSMC, structural maintenance of chromosomesS, supplementarytranscription profileWT, wild type

Identifiers

PMID25483075
PMCPMC4612677
OpenAlexW2036339708

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LicenceCC BY-NC
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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.