Evidence map›Paper›PMID 25482814›Full record

ArticlePlant signaling & behavior2014

A genetic screen for mutants defective in IAA1-LUC degradation in Arabidopsis thaliana reveals an important requirement for TOPOISOMERASE6B in auxin physiology.

Jonathan Gilkerson, Judy Callis

Open access · bronzeAbstract read
In one paragraph

Article in Plant signaling & behavior, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
1.4field-weighted citation impact, top 15% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed, 4 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

2 authors at 2 institutions in 1 country.

Jonathan Gilkersona Department of Molecular and Cellular Biology and Plant Biology Graduate Group ; University of California ; Davis , CA USA.
Judy Callis
University of California, Davis · USUniversity of California System · US

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Many plant growth and developmental processes are modulated by the hormone auxin. Auxin-modulated proteolysis of Aux/IAAs, a family of transcriptional repressors, represents a major mode of auxin action. Auxin facilitates the interaction of Aux/IAAs with TIR1/AFB F-box proteins, promoting their ubiquitination by the SCF(TIR1/AFB) ubiquitin E3 ligase leading to subsequent degradation by the 26S proteasome. To identify new genes regulating Aux/IAA proteolysis in Arabidopsis thaliana, we took a genetic approach, identifying individuals with altered degradation of an IAA1-luciferase fusion protein (IAA1-LUC). A mutant with 2-fold slower IAA1-LUC degradation rate compared with wild-type was isolated. Positional cloning identified the mutant as an allele of TOPOISOMERASE6B, named top6b-7. TOP6B encodes a subunit of a plant and archea-specific enzyme regulating endoreduplication, DNA damage repair and transcription in plants. T-DNA insertion alleles (top6b-8 and top6b-9) were also analyzed. top6b-7 seedlings are less sensitive to exogenous auxin than wild-type siblings in primary root growth assays, and experiments with DR5:GUS. Additionally, top6b-7 seedlings have a 40% reduction in the amount of endogenous IAA. These data suggest that increased IAA1-LUC half-life in top6b-7 probably results from a combination of both lower endogenous IAA levels and reduced sensitivity to auxin.

Indexed as

Genetic TestingProteolysisAllelesAmino Acid SequenceArabidopsisArabidopsis ProteinsBase SequenceChromosome MappingDNA, BacterialDNA-Binding ProteinsGlucuronidaseIndoleacetic AcidsLuciferasesMolecular Sequence DataMutagenesis, InsertionalMutationArabidopsis ProteinsDNA, BacterialDNA-Binding ProteinsGlucuronidaseIAA1 protein, ArabidopsisIndoleacetic AcidsLuciferasesNuclear ProteinsRecombinant Fusion ProteinsT-DNA2, 4-D, 2, 4-dichlorophenoxyacetic acidArabidopsis thalianaAux/IAAauxinDR5:GUSIAA1-LUC, IAA1-luciferase fusion proteinIAA, indole-3-acetic acidindole-3-acetic acidluciferase fusionsLUC, luciferaseprotein degradationtop6b, TOPOISOMERASE6BTOPOISOMERASE6BUPS, ubiquitin proteasome system

Identifiers

PMID25482814
PMCPMC4622002
OpenAlexW2077060221

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.