Evidence map›Paper›PMID 25482786›Full record

ReviewPlant signaling & behavior2015

Plant exomics: concepts, applications and methodologies in crop improvement.

Uzair Hashmi, Samia Shafqat, Faria Khan, Misbah Majid, Harris Hussain, Alvina Gul Kazi, Riffat John, Parvaiz Ahmad

Abstract readReview
In one paragraph

Review in Plant signaling & behavior, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed.

  1. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors.

Uzair Hashmia Atta ur Rahman School of Applied Biosciences ; National University of Sciences and Technology ; Islamabad , Pakistan.
Samia Shafqat
Faria Khan
Misbah Majid
Harris Hussain
Alvina Gul Kazi
Riffat John
Parvaiz Ahmad

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Molecular breeding has a crucial role in improvement of crops. Conventional breeding techniques have failed to ameliorate food production. Next generation sequencing has established new concepts of molecular breeding. Exome sequencing has proven to be a significant tool for assessing natural evolution in plants, studying host pathogen interactions and betterment of crop production as exons assist in interpretation of allelic variation with respect to their phenotype. This review covers the platforms for exome sequencing, next generation sequencing technologies that have revolutionized exome sequencing and led toward development of third generation sequencing. Also discussed in this review are the uses of these sequencing technologies to improve wheat, rice and cotton yield and how these technologies are used in exploring the biodiversity of crops, providing better understanding of plant-host pathogen interaction and assessing the process of natural evolution in crops and it also covers how exome sequencing identifies the gene pool involved in symbiotic and other co-existential systems. Furthermore, we conclude how integration of other methodologies including whole genome sequencing, proteomics, transcriptomics and metabolomics with plant exomics covers the areas which are left untouched with exomics alone and in the end how these integration will transform the future of crops.

Indexed as

Crops, AgriculturalExomeExonsGene Expression Regulation, PlantGenetic VariationGenome, PlantPlant ProteinsSequence Analysis, DNAPlant ProteinsBAC, bacterial artificial chromosomeBGR, bacterial grain rotbiodiversityCBOL, consortium for 860 the barcode of lifecrop improvementdNMPs, deoxyribosenucleoside monophosphatesETI, effector-triggered immunityexome sequencingHPRT, hypoxanthineguanine phosphoribosyl transferaseMMs, molecular markersNGS, next generation sequencingNITSR, nuclear internal transcribed spacer regionOPC, open promoter complexplant biotechnologyplant-host pathogen interactionsQTL, quantitative trait locusSMRT, single molecule real timeSNPs, single nucleotide poly-morphismsSOLiD, sequencing by oligonucleotide ligation and detectionWES, whole exome sequencingWGS, whole genome sequencingWGS, whole genome shotgun

Identifiers

PMID25482786
PMCPMC4622497

What OpenQuestion holds

Textmetadata
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.