Evidence map›Paper›PMID 25481572›Full record

ArticleBMC genomics2014

Identification of a lineage specific zinc responsive genomic island in Mycobacterium avium ssp. paratuberculosis.

Elke Eckelt, Michael Jarek, Cornelia Frömke, Jochen Meens, Ralph Goethe

Open access · goldAbstract read
In one paragraph

Article in BMC genomics, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 14 papers.

0numbers the graph read from it
0cells of the map it votes in
14citing papers in PubMed
1.1field-weighted citation impact, top 22% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

14 citing papers in PubMed, 21 citations in OpenAlex.

  1. Article
  2. Binding of MAP3773c Protein ofInternational journal of molecular sciences · 2024
    Article
  3. Article
  4. Article
  5. Identification and Characterization ofJournal of bacteriology · 2021
    Article
  6. Review
  7. Review
  8. Complete Genome Sequence of OvineMicroorganisms · 2020
    Article
  9. Article
  10. Elucidating the Regulon of a FurFrontiers in microbiology · 2020
    Article
  11. Bacterial zinc uptake regulator proteins and their regulons.Biochemical Society transactions · 2018
    Review
  12. Zinc depletion induces ribosome hibernation in mycobacteria.Proceedings of the National Academy of Sciences of the United States of America · 2018
    Article
  13. Article
  14. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 3 institutions in 2 countries.

Elke Eckelt
Michael Jarek
Cornelia Frömke
Jochen Meens
Ralph GoetheInstitute for Microbiology, Department of Infectious Diseases, University of Veterinary Medicine Hannover, Bischofsholer Damm 15, 30173 Hannover, Germany. ralph.goethe@tiho-hannover.de.
University of Veterinary Medicine Hannover, Foundation · DEUniversity of Veterinary Medicine Vienna · ATHelmholtz Centre for Infection Research · DE

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

backgroundMaintenance of metal homeostasis is crucial in bacterial pathogenicity as metal starvation is the most important mechanism in the nutritional immunity strategy of host cells. Thus, pathogenic bacteria have evolved sensitive metal scavenging systems to overcome this particular host defence mechanism. The ruminant pathogen Mycobacterium avium ssp. paratuberculosis (MAP) displays a unique gut tropism and causes a chronic progressive intestinal inflammation. MAP possesses eight conserved lineage specific large sequence polymorphisms (LSP), which distinguish MAP from its ancestral M. avium ssp. hominissuis or other M. avium subspecies. LSP14 and LSP15 harbour many genes proposed to be involved in metal homeostasis and have been suggested to substitute for a MAP specific, impaired mycobactin synthesis.

resultsIn the present study, we found that a LSP14 located putative IrtAB-like iron transporter encoded by mptABC was induced by zinc but not by iron starvation. Heterologous reporter gene assays with the lacZ gene under control of the mptABC promoter in M. smegmatis (MSMEG) and in a MSMEG∆furB deletion mutant revealed a zinc dependent, metalloregulator FurB mediated expression of mptABC via a conserved mycobacterial FurB recognition site. Deep sequencing of RNA from MAP cultures treated with the zinc chelator TPEN revealed that 70 genes responded to zinc limitation. Remarkably, 45 of these genes were located on a large genomic island of approximately 90 kb which harboured LSP14 and LSP15. Thirty-five of these genes were predicted to be controlled by FurB, due to the presence of putative binding sites. This clustering of zinc responsive genes was exclusively found in MAP and not in other mycobacteria.

conclusionsOur data revealed a particular genomic signature for MAP given by a unique zinc specific locus, thereby suggesting an exceptional relevance of zinc for the metabolism of MAP. MAP seems to be well adapted to maintain zinc homeostasis which might contribute to the peculiarity of MAP pathogenicity.

Indexed as

Genes, BacterialAmino Acid SequenceATP-Binding Cassette TransportersBacterial ProteinsBinding SitesCluster AnalysisGenetic LociGenomic IslandsHigh-Throughput Nucleotide SequencingMolecular Sequence DataMycobacterium avium subsp. paratuberculosisOperonSequence AlignmentSequence Analysis, RNAZincATP-Binding Cassette TransportersBacterial ProteinsZinc

Identifiers

PMID25481572
PMCPMC4298942
OpenAlexW2090755112

What OpenQuestion holds

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LicenceCC BY
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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.