Evidence map›Paper›PMID 25481009›Full record

ArticleBioinformatics (Oxford, England)2015

ICMA: an integrated cardiac modeling and analysis platform.

Jagir R Hussan, Peter J Hunter, Patrick A Gladding, Neil Greenberg, Richard Christie, Alan Wu, Hugh Sorby, James D Thomas

Open access · hybridAbstract read
PubMed Full text at PMC Publisher
In one paragraph

Article in Bioinformatics (Oxford, England), 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

0numbers the graph read from it
0cells of the map it votes in
0citing papers in PubMed
0.4field-weighted citation impact, top 32% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

0 citing papers in PubMed, 3 citations in OpenAlex.

No citing paper in PubMed yet.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 5 institutions in 2 countries.

Jagir R HussanAuckland Bioengineering Institute, University of Auckland, Auckland, New Zealand, Waitemata District Health Board, North Shore Hospital, Auckland 0622, New Zealand, National Space Biomedical Research Institute, Houston, TX 77030-1402, USA, Cleveland Clinic Foundation, Cleveland, OH 44195, USA and Feinberg School of Medicine, Northwestern University, Chicago, IL 60611, USA.
Peter J HunterAuckland Bioengineering Institute, University of Auckland, Auckland, New Zealand, Waitemata District Health Board, North Shore Hospital, Auckland 0622, New Zealand, National Space Biomedical Research Institute, Houston, TX 77030-1402, USA, Cleveland Clinic Foundation, Cleveland, OH 44195, USA and Feinberg School of Medicine, Northwestern University, Chicago, IL 60611, USA.
Patrick A GladdingAuckland Bioengineering Institute, University of Auckland, Auckland, New Zealand, Waitemata District Health Board, North Shore Hospital, Auckland 0622, New Zealand, National Space Biomedical Research Institute, Houston, TX 77030-1402, USA, Cleveland Clinic Foundation, Cleveland, OH 44195, USA and Feinberg School of Medicine, Northwestern University, Chicago, IL 60611, USA.
Neil GreenbergAuckland Bioengineering Institute, University of Auckland, Auckland, New Zealand, Waitemata District Health Board, North Shore Hospital, Auckland 0622, New Zealand, National Space Biomedical Research Institute, Houston, TX 77030-1402, USA, Cleveland Clinic Foundation, Cleveland, OH 44195, USA and Feinberg School of Medicine, Northwestern University, Chicago, IL 60611, USA Auckland Bioengineering Institute, University of Auckland, Auckland, New Zealand, Waitemata District Health Board, North Shore Hospital, Auckland 0622, New Zealand, National Space Biomedical Research Institute, Houston, TX 77030-1402, USA, Cleveland Clinic Foundation, Cleveland, OH 44195, USA and Feinberg School of Medicine, Northwestern University, Chicago, IL 60611, USA.
Richard ChristieAuckland Bioengineering Institute, University of Auckland, Auckland, New Zealand, Waitemata District Health Board, North Shore Hospital, Auckland 0622, New Zealand, National Space Biomedical Research Institute, Houston, TX 77030-1402, USA, Cleveland Clinic Foundation, Cleveland, OH 44195, USA and Feinberg School of Medicine, Northwestern University, Chicago, IL 60611, USA.
Alan WuAuckland Bioengineering Institute, University of Auckland, Auckland, New Zealand, Waitemata District Health Board, North Shore Hospital, Auckland 0622, New Zealand, National Space Biomedical Research Institute, Houston, TX 77030-1402, USA, Cleveland Clinic Foundation, Cleveland, OH 44195, USA and Feinberg School of Medicine, Northwestern University, Chicago, IL 60611, USA.
Hugh SorbyAuckland Bioengineering Institute, University of Auckland, Auckland, New Zealand, Waitemata District Health Board, North Shore Hospital, Auckland 0622, New Zealand, National Space Biomedical Research Institute, Houston, TX 77030-1402, USA, Cleveland Clinic Foundation, Cleveland, OH 44195, USA and Feinberg School of Medicine, Northwestern University, Chicago, IL 60611, USA.
James D ThomasAuckland Bioengineering Institute, University of Auckland, Auckland, New Zealand, Waitemata District Health Board, North Shore Hospital, Auckland 0622, New Zealand, National Space Biomedical Research Institute, Houston, TX 77030-1402, USA, Cleveland Clinic Foundation, Cleveland, OH 44195, USA and Feinberg School of Medicine, Northwestern University, Chicago, IL 60611, USA Auckland Bioengineering Institute, University of Auckland, Auckland, New Zealand, Waitemata District Health Board, North Shore Hospital, Auckland 0622, New Zealand, National Space Biomedical Research Institute, Houston, TX 77030-1402, USA, Cleveland Clinic Foundation, Cleveland, OH 44195, USA and Feinberg School of Medicine, Northwestern University, Chicago, IL 60611, USA.
North Shore Hospital · NZUniversity of Auckland · NZWaitemata District Health Board · NZCleveland Clinic · USNational Space Biomedical Research Institute · US

Funding

NCI NIH HHS CA02203
6 · The paper itself

Abstract

unlabelledICMA, a software framework to create 3D finite element models of the left ventricle from cardiac ultrasound or magnetic resonance imaging (MRI) data, has been made available as an open-source code. The framework is hardware vendor independent and uses speckle tracking (endocardial border detection) on ultrasound (MRI) imaging data in the form of DICOM. Standard American Heart Association segment-based strain analysis can be performed using a browser-based interface. The speckle tracking, border detection and model fitting methods are implemented in C++ using open-source tools. They are wrapped as web services and orchestrated via a JBOSS-based application server. AVAILABILITY AND IMPLEMENTATION: The source code for ICMA is freely available under MPL 1.1 or GPL 2.0 or LGPL 2.1 license at https://github.com/ABI-Software-Laboratory/ICMA and a standalone virtual machine at http://goo.gl/M4lJKH for download. CONTACT: r.jagir@auckland.ac.nz SUPPLEMENTARY INFORMATION: Supplementary materials are available at Bioinformatics online.

Indexed as

Diagnostic ImagingModels, CardiovascularSoftwareComputational BiologyDatabases, FactualHeartHeart VentriclesHumans

Identifiers

PMID25481009
PMCPMC4393521
OpenAlexW2102624254

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.