Evidence map›Paper›PMID 25480641›Full record

ReviewAdvances in experimental medicine and biology2014

Systems analysis of high-throughput data.

Rosemary Braun

Abstract readReview
In one paragraph

Review in Advances in experimental medicine and biology, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 13 papers.

0numbers the graph read from it
0cells of the map it votes in
13citing papers in PubMed
7.5field-weighted citation impact, top 3% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

13 citing papers in PubMed, 30 citations in OpenAlex.

  1. Article
  2. Review
  3. Review
  4. Review
  5. Review
  6. Review
  7. Article
  8. Article
  9. SOScientific reports · 2017
    Article
  10. Article
  11. Article
  12. Animal-Free Chemical Safety Assessment.Frontiers in pharmacology · 2016
    Review
  13. Computational Tools for Parsimony Phylogenetic Analysis of Omics Data.Omics : a journal of integrative biology · 2015
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

1 author at 1 institution in 1 country.

Rosemary BraunBiostatistics Division, Department of Preventive Medicine and Northwestern Institute on Complex Systems, Northwestern University, 680 N. Lake Shore Dr., Suite 1400, 60611, Chicago, IL, USA, rbraun@northwestern.edu.
Northwestern University · US

Funding

Tumor Environment and Metastasis (TEAM) Research ProgramP30CA060553 · NCI · NORTHWESTERN UNIVERSITY AT CHICAGO · PI Daniela E Matei · 1993 to 2026
$153.9M
Novel Pathway Analysis Methods for Identifying Genomic Causes of CancerK22CA148779 · NCI · NORTHWESTERN UNIVERSITY AT CHICAGO · PI BRAUN, ROSEMARY · 2012 to 2014
$475k
NCI NIH HHS K22 CA148779NCI NIH HHS P30 CA060553
6 · The paper itself

Abstract

Modern high-throughput assays yield detailed characterizations of the genomic, transcriptomic, and proteomic states of biological samples, enabling us to probe the molecular mechanisms that regulate hematopoiesis or give rise to hematological disorders. At the same time, the high dimensionality of the data and the complex nature of biological interaction networks present significant analytical challenges in identifying causal variations and modeling the underlying systems biology. In addition to identifying significantly disregulated genes and proteins, integrative analysis approaches that allow the investigation of these single genes within a functional context are required. This chapter presents a survey of current computational approaches for the statistical analysis of high-dimensional data and the development of systems-level models of cellular signaling and regulation. Specifically, we focus on multi-gene analysis methods and the integration of expression data with domain knowledge (such as biological pathways) and other gene-wise information (e.g.,  sequence or methylation data) to identify novel functional modules in the complex cellular interaction network.

Indexed as

Data Interpretation, StatisticalSystems BiologyAnimalsCluster AnalysisGenetic Association StudiesHigh-Throughput Screening AssaysHumansMicroarray AnalysisResearch DesignSignal Transduction

Identifiers

PMID25480641
PMCPMC4426208
OpenAlexW13992469

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.