ArticlePloS one2014
RNA-seq analysis of oil palm under cold stress reveals a different C-repeat binding factor (CBF) mediated gene expression pattern in Elaeis guineensis compared to other species.
Article in PloS one, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 20 papers.
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20 citing papers in PubMed, 39 citations in OpenAlex.
- Tropical vulnerability and temperate resilience: molecular and physiological insights into cold stress adaptation in oil palm.GM crops & food · 2026Review
- Transcriptome Analysis Coupled with Metabolome Profiling at a Key Time Point Reveals the Molecular Mechanism of Cold Stress Response in Oil Palm (Plants (Basel, Switzerland) · 2026Article
- Unraveling the response of secondary metabolites to cold tolerance in oil palm by integration of physiology and metabolomic analyses.BMC plant biology · 2025Article
- Regulatory roles of noncoding RNAs in oil palm response to cold stress.Frontiers in plant science · 2025Article
- Comparative transcriptomics reveals key regulatory networks underlying cold stress adaptation in oil palm (Frontiers in plant science · 2025Article
- Exogenous strigolactones alleviate low-temperature stress in peppers seedlings by reducing the degree of photoinhibition.BMC plant biology · 2024Article
- Multi-Omics Approaches in Oil Palm Research: A Comprehensive Review of Metabolomics, Proteomics, and Transcriptomics Based on Low-Temperature Stress.International journal of molecular sciences · 2024Review
- Integrative Omics Analysis of Three Oil Palm Varieties Reveals (Tanzania × Ekona) TE as a Cold-Resistant Variety in Response to Low-Temperature Stress.International journal of molecular sciences · 2022Article
- RNA sequencing and weighted gene co-expression network analysis uncover the hub genes controlling cold tolerance inFrontiers in plant science · 2022Article
- Transcriptomic and metabolomic profiling of strawberry during postharvest cooling and heat storage.Frontiers in plant science · 2022Article
- Phenomics, genomics of oil palm (Physiology and molecular biology of plants : an international journal of functional plant biology · 2021Review
- Functional Characterization of Cotton C-Repeat Binding Factor Genes Reveal Their Potential Role in Cold Stress Tolerance.Frontiers in plant science · 2021Article
- Correlation analysis of cold-related gene expression with physiological and biochemical indicators under cold stress in oil palm.PloS one · 2019Article
- Comparative transcriptome analysis reveals phytohormone signalings, heat shock module and ROS scavenger mediate the cold-tolerance of rubber tree.Scientific reports · 2018Article
- Genome-Wide Association Mapping for Cold Tolerance in a Core Collection of Rice (Frontiers in plant science · 2018Article
- Comparative transcriptome profiling of freezing stress responses in loquat (Eriobotrya japonica) fruitlets.Journal of plant research · 2017Article
- Integrated transcriptomics and metabolomics analysis to characterize cold stress responses in Nicotiana tabacum.BMC genomics · 2017Article
- Genome-wide association analysis of seedling traits in diverse Sorghum germplasm under thermal stress.BMC plant biology · 2017Article
- Article
- Oil palm natural diversity and the potential for yield improvement.Frontiers in plant science · 2015Article
Corrections and comments
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Authors and funding
7 authors at 3 institutions in 2 countries.
Funding
No grant is acknowledged in the PubMed record.
Abstract
Elaeis guineensis as a tropical oil-crop is particularly sensitive to low temperature. Improvement of cold-tolerance may significantly increase the total cultivation area of this tropical oil-crop worldwide. We sequenced cold-treated and control (untreated) samples of Elaeis guineensis. De novo assembly generated 51,452 unigenes with an average length of 703 bp. Subsequently, these expressed sequences were functionally annotated. In the K category (transcription factors) of COG (Cluster of Orthologous Group) annotation, the largest proportion of genes induced and repressed at least two-fold under cold stress were from the AP2/ERE family, indicating that C-repeat binding factor, (CBFs, members of the AP2/ERE family) may play a central role in cold tolerance in Elaeis guineensis. Subsequently, the CBF-mediated signal transduction pathway was reconstructed based on transcriptome data and the gene expression profile involving the pathway was examined using real-time quantitative RT-PCR (qRT-PCR). CBFs reached maximum transcript level both at medium (4 h) and long period time points (7 days), contrary to the expression pattern of CBFs in Arabidopsis and rice. Moreover, the promoters of downstream Cold Responsive gene (CORs) regulated by CBFs were analyzed. Conservation, mutation and absence of the DRE core motif were detected in the promoters of six CORs. These mutations in DRE motifs suggest that CORs may not be induced via cold stress in Elaeis guineensis.
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