Evidence map›Paper›PMID 25479164›Full record

ArticlePloS one2014

Computational and experimental analysis of the secretome of Methylococcus capsulatus (Bath).

Stine Indrelid, Geir Mathiesen, Morten Jacobsen, Tor Lea, Charlotte R Kleiveland

Abstract read
In one paragraph

Article in PloS one, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 6 papers.

0numbers the graph read from it
0cells of the map it votes in
6citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

6 citing papers in PubMed.

  1. Article
  2. Article
  3. Secretomic analyses ofBiotechnology for biofuels · 2019
    Article
  4. Review
  5. The Soil BacteriumFrontiers in microbiology · 2017
    Article
  6. Frontiers in microbiology · 2016
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors.

Stine IndrelidØstfold Hospital Trust, Fredrikstad, Norway; Department of Chemistry, Biotechnology and Food Science, Norwegian University of Life Sciences, Aas, Norway.
Geir MathiesenDepartment of Chemistry, Biotechnology and Food Science, Norwegian University of Life Sciences, Aas, Norway.
Morten JacobsenØstfold Hospital Trust, Fredrikstad, Norway; Department of Chemistry, Biotechnology and Food Science, Norwegian University of Life Sciences, Aas, Norway; Department of Gastrointestinal and Children Surgery, Institute of Clinical Medicine, University of Oslo, Oslo, Norway.
Tor LeaDepartment of Chemistry, Biotechnology and Food Science, Norwegian University of Life Sciences, Aas, Norway.
Charlotte R KleivelandØstfold Hospital Trust, Fredrikstad, Norway; Department of Chemistry, Biotechnology and Food Science, Norwegian University of Life Sciences, Aas, Norway.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The Gram-negative methanotroph Methylococcus capsulatus (Bath) was recently demonstrated to abrogate inflammation in a murine model of inflammatory bowel disease, suggesting interactions with cells involved in maintaining mucosal homeostasis and emphasizing the importance of understanding the many properties of M. capsulatus. Secreted proteins determine how bacteria may interact with their environment, and a comprehensive knowledge of such proteins is therefore vital to understand bacterial physiology and behavior. The aim of this study was to systematically analyze protein secretion in M. capsulatus (Bath) by identifying the secretion systems present and the respective secreted substrates. Computational analysis revealed that in addition to previously recognized type II secretion systems and a type VII secretion system, a type Vb (two-partner) secretion system and putative type I secretion systems are present in M. capsulatus (Bath). In silico analysis suggests that the diverse secretion systems in M.capsulatus transport proteins likely to be involved in adhesion, colonization, nutrient acquisition and homeostasis maintenance. Results of the computational analysis was verified and extended by an experimental approach showing that in addition an uncharacterized protein and putative moonlighting proteins are released to the medium during exponential growth of M. capsulatus (Bath).

Indexed as

Computer SimulationBacterial ProteinsBacterial Secretion SystemsMethylococcus capsulatusBacterial ProteinsBacterial Secretion Systems

Identifiers

PMID25479164
PMCPMC4257694

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.