Evidence map›Paper›PMID 25479130›Full record

ArticleLife (Basel, Switzerland)2014

Growth and division in a dynamic protocell model.

Marco Villani, Alessandro Filisetti, Alex Graudenzi, Chiara Damiani, Timoteo Carletti, Roberto Serra

Abstract read
In one paragraph

Article in Life (Basel, Switzerland), 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 10 papers.

0numbers the graph read from it
0cells of the map it votes in
10citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

10 citing papers in PubMed.

  1. Protocellular energy transduction, information and fitness.Philosophical transactions of the Royal Society of London. Series B, Biological sciences · 2025
    Article
  2. Models of Protocells Undergoing Asymmetrical Division.Entropy (Basel, Switzerland) · 2024
    Article
  3. Article
  4. The limits of metabolic heredity in protocells.Proceedings. Biological sciences · 2022
    Article
  5. Article
  6. Article
  7. Article
  8. Synthetic transitions: towards a new synthesis.Philosophical transactions of the Royal Society of London. Series B, Biological sciences · 2016
    Review
  9. Generating minimal living systems from non-living materials and increasing their evolutionary abilities.Philosophical transactions of the Royal Society of London. Series B, Biological sciences · 2016
    Review
  10. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors.

Marco VillaniDepartment of Physics, Informatics and Mathematics, University of Modena and Reggio Emilia, v. Campi 213a, 41125 Modena, Italy. marco.villani@unimore.it.
Alessandro FilisettiDepartment of Environmental Sciences (DAIS), University Ca' Foscari, Ca' Minich, S. Marco 2940, 30124 Venice, Italy. alessandro.filisetti@unive.it.
Alex GraudenziDepartment of Informatics, Systems and Communication, University of Milan-Bicocca, Viale Sarca, 336, 20126 Milano, Italy. alex.graudenzi@unimib.it.
Chiara DamianiSYSBIO-Centre for Systems Biology, University of Milan-Bicocca, Piazza della Scienza 2, 20126 Milano, Italy. chiara.damiani@unimib.it.
Timoteo CarlettiDepartment of Mathematics and Namur Center for Complex Systems-naXys, University of Namur, rue de Bruxelles 61, B-5000 Namur, Belgium. timoteo.carletti@unamur.be.
Roberto SerraDepartment of Physics, Informatics and Mathematics, University of Modena and Reggio Emilia, v. Campi 213a, 41125 Modena, Italy. roberto.serra@unimore.it.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

In this paper a new model of growing and dividing protocells is described, whose main features are (i) a lipid container that grows according to the composition of the molecular milieu (ii) a set of "genetic memory molecules" (GMMs) that undergo catalytic reactions in the internal aqueous phase and (iii) a set of stochastic kinetic equations for the GMMs. The mass exchange between the external environment and the internal phase is described by simulating a semipermeable membrane and a flow driven by the differences in chemical potentials, thereby avoiding to resort to sometimes misleading simplifications, e.g., that of a flow reactor. Under simple assumptions, it is shown that synchronization takes place between the rate of replication of the GMMs and that of the container, provided that the set of reactions hosts a so-called RAF (Reflexive Autocatalytic, Food-generated) set whose influence on synchronization is hereafter discussed. It is also shown that a slight modification of the basic model that takes into account a rate-limiting term, makes possible the growth of novelties, allowing in such a way suitable evolution: so the model represents an effective basis for understanding the main abstract properties of populations of protocells.

Identifiers

PMID25479130
PMCPMC4284470

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.