ArticlePloS one2014
Genome-wide analysis of microRNAs and their target genes related to leaf senescence of rice.
Article in PloS one, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 22 papers.
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Who cites it
22 citing papers in PubMed, 55 citations in OpenAlex.
- Regulatory Network of Leaf Senescence inInternational journal of molecular sciences · 2026Review
- Switching action modes of miR408-5p mediates auxin signaling in rice.Nature communications · 2024Article
- Novel genes and alleles of the BTB/POZ protein family in Oryza rufipogon.Scientific reports · 2023Article
- A cross-species co-functional gene network underlying leaf senescence.Horticulture research · 2023Article
- Epigenetic control of plant senescence and cell death and its application in crop improvement.Frontiers in plant science · 2023Review
- Know when and how to die: gaining insights into the molecular regulation of leaf senescence.Physiology and molecular biology of plants : an international journal of functional plant biology · 2022Review
- Integrated transcriptomics and miRNAomics provide insights into the complex multi-tiered regulatory networks associated with coleoptile senescence in rice.Frontiers in plant science · 2022Article
- Revealing the mechanisms of the bioactive ingredients accumulation inFrontiers in plant science · 2022Article
- Leaf senescence: progression, regulation, and application.Molecular horticulture · 2021Review
- Downregulation of GeBP-like α factor by MiR827 suggests their involvement in senescence and phosphate homeostasis.BMC biology · 2021Article
- Diverse Roles of MAX1 Homologues in Rice.Genes · 2020Article
- Drought Response in Rice: The miRNA Story.International journal of molecular sciences · 2019Review
- Genome-wide association mapping of leaf mass traits in a Vietnamese rice landrace panel.PloS one · 2019Article
- Identification and expression analysis of microRNAs during ovule development in rice (Oryza sativa) by deep sequencing.Plant cell reports · 2017Article
- microRNAs differentially modulated in response to heat and drought stress in durum wheat cultivars with contrasting water use efficiency.Functional & integrative genomics · 2017Article
- Article
- Genome-wide dynamics of alternative polyadenylation in rice.Genome research · 2016Article
- Evaluation of microRNA alignment techniques.RNA (New York, N.Y.) · 2016Article
- microRNA-dependent gene regulatory networks in maize leaf senescence.BMC plant biology · 2016Article
- Identification of miRNAs associated with dark-induced senescence in Arabidopsis.BMC plant biology · 2015Article
Corrections and comments
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Authors and funding
7 authors at 2 institutions in 1 country.
Funding
No grant is acknowledged in the PubMed record.
Abstract
Grain production of rice (Oryza sativa L.) is a top priority in ensuring food security for human beings. One of the approaches to increase yield is to delay leaf senescence and to extend the available time for photosynthesis. MicroRNAs (miRNAs) are key regulators of aging and cellular senescence in eukaryotes. Here, to help understand their biological role in rice leaf senescence, we report identification of miRNAs and their putative target genes by deep sequencing of six small RNA libraries, six RNA-seq libraries and two degradome libraries from the leaves of two super hybrid rice, Nei-2-You 6 (N2Y6, age-resistant rice) and Liang-You-Pei 9 (LYP9, age-sensitive rice). In total 372 known miRNAs, 162 miRNA candidates and 1145 targets were identified. Compared with the expression of miRNAs in the leaves of LYP9, the numbers of miRNAs up-regulated and down-regulated in the leaves of N2Y6 were 47 and 30 at early stage of grain-filling, 21 and 17 at the middle stage, and 11 and 37 at the late stage, respectively. Six miRNA families, osa-miR159, osa-miR160 osa-miR164, osa-miR167, osa-miR172 and osa-miR1848, targeting the genes encoding APETALA2 (AP2), zinc finger proteins, salicylic acid-induced protein 19 (SIP19), auxin response factors (ARF) and NAC transcription factors, respectively, were found to be involved in leaf senescence through phytohormone signaling pathways. These results provided valuable information for understanding the miRNA-mediated leaf senescence of rice, and offered an important foundation for rice breeding.
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