ArticlePloS one2014
Identification of regulatory genes implicated in continuous flowering of longan (Dimocarpus longan L.).
Article in PloS one, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 20 papers.
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Who cites it
20 citing papers in PubMed.
- Physiology and Genetics of Continuous Flowering in Plants.Plant, cell & environment · 2026Review
- Whole genome identification and operational analysis of theFrontiers in plant science · 2026Article
- Dual roles of pear EARLY FLOWERING 4 -like genes in regulating flowering and leaf senescence.BMC plant biology · 2024Article
- Multiple transcriptome comparisons reveal the essential roles ofFrontiers in genetics · 2023Article
- Chlorate-induced molecular floral transition revealed by transcriptomes.Open life sciences · 2023Article
- High-Throughput Sequencing Reveals Novel microRNAs Involved in the Continuous Flowering Trait of Longan (International journal of molecular sciences · 2022Article
- A comparative proteomic analysis provides insight into the molecular mechanism of bud break in longan.BMC plant biology · 2022Article
- Transcriptome sequencing and DEG analysis in different developmental stages of floral buds induced by potassium chlorate inPlant biotechnology (Tokyo, Japan) · 2022Article
- Genomewide Identification and Characterization of the Genes Involved in the Flowering of Cotton.International journal of molecular sciences · 2022Article
- Genome-Wide Identification and Expression Analysis of the R2R3-MYB Transcription Factor Family Revealed Their Potential Roles in the Flowering Process in Longan (Frontiers in plant science · 2022Article
- Integrative mRNA and Long Noncoding RNA Analysis Reveals the Regulatory Network of Floral Bud Induction in Longan (Frontiers in plant science · 2022Article
- Morphological, phenological, and transcriptional analyses provide insight into the diverse flowering traits of a mutant of the relic woody plant Liriodendron chinense.Horticulture research · 2021Article
- To bloom once or more times: the reblooming mechanisms of Iris germanica revealed by transcriptome profiling.BMC genomics · 2020Article
- Genome-Wide Identification and Expression Analysis of Sugar Transporter (ST) Gene Family in Longan (Plants (Basel, Switzerland) · 2020Article
- Genome-Wide Identification and Expression Analysis of Auxin Response Factor (ARF) Gene Family in Longan (Dimocarpus longan L.).Plants (Basel, Switzerland) · 2020Article
- Comprehensive analysis of the longan transcriptome reveals distinct regulatory programs during the floral transition.BMC genomics · 2019Article
- Identification ofInternational journal of molecular sciences · 2018Article
- The Ubiquitin-Conjugating Enzyme Gene Family in Longan (Dimocarpus longan Lour.): Genome-Wide Identification and Gene Expression during Flower Induction and Abiotic Stress Responses.Molecules (Basel, Switzerland) · 2018Article
- Genome-wide sequencing of longan (Dimocarpus longan Lour.) provides insights into molecular basis of its polyphenol-rich characteristics.GigaScience · 2017Article
- Application of Genomic Technologies to the Breeding of Trees.Frontiers in genetics · 2016Review
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Authors and funding
5 authors.
Funding
No grant is acknowledged in the PubMed record.
Abstract
Longan (Dimocarpus longan L.) is a tropical/subtropical fruit tree of significant economic importance in Southeast Asia. However, a lack of transcriptomic and genomic information hinders research on longan traits, such as the control of flowering. In this study, high-throughput RNA sequencing (RNA-Seq) was used to investigate differentially expressed genes between a unique longan cultivar 'Sijimi'(S) which flowers throughout the year and a more typical cultivar 'Lidongben'(L) which flowers only once in the season, with the aim of identifying candidate genes associated with continuous flowering. 36,527 and 40,982 unigenes were obtained by de novo assembly of the clean reads from cDNA libraries of L and S cultivars. Additionally 40,513 unigenes were assembled from combined reads of these libraries. A total of 32,475 unigenes were annotated by BLAST search to NCBI non-redundant protein (NR), Swiss-Prot, Clusters of Orthologous Groups (COGs) and Kyoto Encyclopedia of Genes and Genomes (KEGG) databases. Of these, almost fifteen thousand unigenes were identified as significantly differentially expressed genes (DEGs) by using Reads Per kb per Million reads (RPKM) method. A total of 6,415 DEGs were mapped to 128 KEGG pathways, and 8,743 DEGs were assigned to 54 Gene Ontology categories. After blasting the DEGs to public sequence databases, 539 potential flowering-related DEGs were identified. In addition, 107 flowering-time genes were identified in longan, their expression levels between two longan samples were compared by RPKM method, of which the expression levels of 15 were confirmed by real-time quantitative PCR. Our results suggest longan homologues of SHORT VEGETATIVE PHASE (SVP), GIGANTEA (GI), F-BOX 1 (FKF1) and EARLY FLOWERING 4 (ELF4) may be involved this flowering trait and ELF4 may be a key gene. The identification of candidate genes related to continuous flowering will provide new insight into the molecular process of regulating flowering time in woody plants.
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