Evidence map›Paper›PMID 25478908›Full record

ArticleDevelopmental biology2015

Zebrafish Rab5 proteins and a role for Rab5ab in nodal signalling.

Emma J Kenyon, Isabel Campos, James C Bull, P Huw Williams, Derek L Stemple, Matthew D Clark

Open access · hybridAbstract read
In one paragraph

Article in Developmental biology, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 9 papers.

0numbers the graph read from it
0cells of the map it votes in
9citing papers in PubMed
0.5field-weighted citation impact, top 38% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

9 citing papers in PubMed, 20 citations in OpenAlex.

  1. Article
  2. Article
  3. Review
  4. Review
  5. Article
  6. Article
  7. Article
  8. Rabs in Signaling and Embryonic Development.International journal of molecular sciences · 2020
    Review
  9. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 4 institutions in 2 countries.

Emma J KenyonWellcome Trust Sanger Institute, Wellcome Trust Genome Campus, Hinxton, Cambridge CB10 1SA, United Kingdom.
Isabel CamposChampalimaud Centre for the Unknown, Fundação Champalimaud, Lisboa, Portugal.
James C BullDepartment of Biosciences, Swansea University, Swansea SA2 8PP, United Kingdom.
P Huw WilliamsWellcome Trust Sanger Institute, Wellcome Trust Genome Campus, Hinxton, Cambridge CB10 1SA, United Kingdom.
Derek L StempleWellcome Trust Sanger Institute, Wellcome Trust Genome Campus, Hinxton, Cambridge CB10 1SA, United Kingdom. Electronic address: ds4@sanger.ac.uk.
Matthew D ClarkSequencing Technology Development, The Genome Analysis Centre, Norwich Research Park, Colney, Norwich NR4 7UH, United Kingdom.
Wellcome Sanger Institute · GBChampalimaud Foundation · PTEarlham Institute · GBSwansea University · GB

Funding

Wellcome Trust 098051Wellcome Trust WR077037/Z/05/ZWellcome Trust WT077047/Z/05/Z
6 · The paper itself

Abstract

The RAB5 gene family is the best characterised of all human RAB families and is essential for in vitro homotypic fusion of early endosomes. In recent years, the disruption or activation of Rab5 family proteins has been used as a tool to understand growth factor signal transduction in whole animal systems such as Drosophila melanogaster and zebrafish. In this study we have examined the functions for four rab5 genes in zebrafish. Disruption of rab5ab expression by antisense morpholino oligonucleotide (MO) knockdown abolishes nodal signalling in early zebrafish embryos, whereas overexpression of rab5ab mRNA leads to ectopic expression of markers that are normally downstream of nodal signalling. By contrast MO disruption of other zebrafish rab5 genes shows little or no effect on expression of markers of dorsal organiser development. We conclude that rab5ab is essential for nodal signalling and organizer specification in the developing zebrafish embryo.

Indexed as

AnimalsGene Knockdown TechniquesIn Situ HybridizationMicroscopy, ElectronMorpholinosNodal Signaling LigandsOrganizers, Embryonicrab5 GTP-Binding ProteinsReverse Transcriptase Polymerase Chain ReactionSignal TransductionZebrafishMorpholinosNodal Signaling Ligandsrab5 GTP-Binding ProteinsNodalRab5Zebrafish

Identifiers

PMID25478908
PMCPMC4294769
OpenAlexW2056908201

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.