Evidence map›Paper›PMID 25478640›Full record

ArticleBiochemical and biophysical research communications2015

Impact of methionine oxidation on calmodulin structural dynamics.

Megan R McCarthy, Andrew R Thompson, Florentin Nitu, Rebecca J Moen, Michael J Olenek, Jennifer C Klein, David D Thomas

Abstract read
In one paragraph

Article in Biochemical and biophysical research communications, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 17 papers.

0numbers the graph read from it
0cells of the map it votes in
17citing papers in PubMed
2.5field-weighted citation impact, top 10% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

17 citing papers in PubMed, 33 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Article
  5. Crosstalk among Calcium ATPases: PMCA, SERCA and SPCA in Mental Diseases.International journal of molecular sciences · 2021
    Review
  6. Article
  7. Article
  8. Structural insight into theScience advances · 2020
    Article
  9. Article
  10. Article
  11. Article
  12. Structural basis for HOCl recognition and regulation mechanisms of HypT, a hypochlorite-specific transcriptional regulator.Proceedings of the National Academy of Sciences of the United States of America · 2019
    Article
  13. Unique methionine-aromatic interactions govern the calmodulin redox sensor.Biochemical and biophysical research communications · 2018
    Article
  14. Article
  15. Article
  16. Article
  17. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 3 institutions in 1 country.

Megan R McCarthyBiochemistry, Molecular Biology and Biophysics Department, University of Minnesota, Minneapolis, MN 55455, USA.
Andrew R ThompsonBiochemistry, Molecular Biology and Biophysics Department, University of Minnesota, Minneapolis, MN 55455, USA.
Florentin NituBiochemistry, Molecular Biology and Biophysics Department, University of Minnesota, Minneapolis, MN 55455, USA.
Rebecca J MoenChemistry and Geology Department, Minnesota State University, Mankato, MN 56001, USA.
Michael J OlenekBiology Department, University of Wisconsin, La Crosse, WI 54601, USA.
Jennifer C KleinBiology Department, University of Wisconsin, La Crosse, WI 54601, USA. Electronic address: jklein@uwlax.edu.
David D ThomasBiochemistry, Molecular Biology and Biophysics Department, University of Minnesota, Minneapolis, MN 55455, USA. Electronic address: ddt@umn.edu.
University of Minnesota · USUniversity of Wisconsin–La Crosse · USMinnesota State University, Mankato · US

Funding

TRAINING PROGRAM IN MUSCLE RESEARCHT32AR007612 · NIAMS · UNIVERSITY OF MINNESOTA TWIN CITIES · PI JAMES M ERVASTI, DAWN A LOWE · 2001 to 2026
$11.3M
Site-Directed Oxidative Modification of Muscle Protein Structural DynamicsR37AG026160 · NIA · UNIVERSITY OF MINNESOTA · PI THOMAS, DAVID D · 2011 to 2020
$4.5M
Protein Oxidation, Structure, &Function in Aging MuscleR01AG026160 · NIA · UNIVERSITY OF MINNESOTA TWIN CITIES · PI THOMAS, DAVID D · 2004 to 2008
$2.2M
Spectroscopic Probes of the Muscle CytoskeletonR01AR063007 · NIAMS · UNIVERSITY OF MINNESOTA · PI THOMAS, DAVID D · 2012 to 2015
$1.3M
Structural impact of methionine oxidation in muscle proteinsR15AG048286 · NIA · UNIVERSITY OF WISCONSIN LA CROSSE · PI KLEIN, JENNIFER CLAIRE · 2015 to 2015
$329k
NIAMS NIH HHS R01 AR063007NIAMS NIH HHS T32 AR007612NIAMS NIH HHS T32 AR07612NIA NIH HHS R01 AG026160NIA NIH HHS R15 AG048286NIA NIH HHS R37 AG026160NIA NIH HHS R37AG26160
6 · The paper itself

Abstract

We have used electron paramagnetic resonance (EPR) to examine the structural impact of oxidizing specific methionine (M) side chains in calmodulin (CaM). It has been shown that oxidation of either M109 or M124 in CaM diminishes CaM regulation of the muscle calcium release channel, the ryanodine receptor (RyR), and that mutation of M to Q (glutamine) in either case produces functional effects identical to those of oxidation. Here we have used site-directed spin labeling and double electron-electron resonance (DEER), a pulsed EPR technique that measures distances between spin labels, to characterize the structural changes resulting from these mutations. Spin labels were attached to a pair of introduced cysteine residues, one in the C-lobe (T117C) and one in the N-lobe (T34C) of CaM, and DEER was used to determine the distribution of interspin distances. Ca binding induced a large increase in the mean distance, in concert with previous X-ray crystallography and NMR data, showing a closed structure in the absence of Ca and an open structure in the presence of Ca. DEER revealed additional information about CaM's structural heterogeneity in solution: in both the presence and absence of Ca, CaM populates both structural states, one with probes separated by ∼4nm (closed) and another at ∼6nm (open). Ca shifts the structural equilibrium constant toward the open state by a factor of 13. DEER reveals the distribution of interprobe distances, showing that each of these states is itself partially disordered, with the width of each population ranging from 1 to 3nm. Both mutations (M109Q and M124Q) decrease the effect of Ca on the structure of CaM, primarily by decreasing the closed-to-open equilibrium constant in the presence of Ca. We propose that Met oxidation alters CaM's functional interaction with its target proteins by perturbing this Ca-dependent structural shift.

Indexed as

AnimalsCalmodulinElectron Spin Resonance SpectroscopyGlutamineMethionineMutationOxidation-ReductionProtein Structure, SecondarySpin LabelsCalmodulinGlutamineMethionineSpin LabelsAgingDEERMuscleOxidative stressPulsed EPRRyanodine receptor

Identifiers

PMID25478640
PMCPMC4312012
OpenAlexW2131850144

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.