Evidence map›Paper›PMID 25477912›Full record

ArticleBrazilian journal of microbiology : [publication of the Brazilian Society for Microbiology]2014

Identification of genes expressed by Cryptococcus gattii during iron deprivation.

Daphine Ariadne Jesus de Paula, Lívia Kmetzsch Rosa e Silva, Charley Christian Staats, Marilene H Vainstein, Ana Lúcia Pinto Joanoni, Luciano Nakazato, Valéria Dutra

Open access · hybridAbstract read
In one paragraph

Article in Brazilian journal of microbiology : [publication of the Brazilian Society for Microbiology], 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

0numbers the graph read from it
0cells of the map it votes in
0citing papers in PubMed
0.2field-weighted citation impact, top 40% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

0 citing papers in PubMed, 2 citations in OpenAlex.

No citing paper in PubMed yet.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 2 institutions in 1 country.

Daphine Ariadne Jesus de PaulaUniversidade Federal de Mato Grosso CuiabáMT Brazil Universidade Federal de Mato Grosso, Cuiabá, MT, Brazil.
Lívia Kmetzsch Rosa e SilvaCentro de Biotecnologia Universidade Federal do Rio Grande do Sul Porto AlegreRS Brazil Centro de Biotecnologia, Universidade Federal do Rio Grande do Sul, Porto Alegre, RS, Brazil.
Charley Christian StaatsCentro de Biotecnologia Universidade Federal do Rio Grande do Sul Porto AlegreRS Brazil Centro de Biotecnologia, Universidade Federal do Rio Grande do Sul, Porto Alegre, RS, Brazil.
Marilene H VainsteinCentro de Biotecnologia Universidade Federal do Rio Grande do Sul Porto AlegreRS Brazil Centro de Biotecnologia, Universidade Federal do Rio Grande do Sul, Porto Alegre, RS, Brazil.
Ana Lúcia Pinto JoanoniUniversidade Federal de Mato Grosso CuiabáMT Brazil Universidade Federal de Mato Grosso, Cuiabá, MT, Brazil.
Luciano NakazatoUniversidade Federal de Mato Grosso CuiabáMT Brazil Universidade Federal de Mato Grosso, Cuiabá, MT, Brazil.
Valéria DutraUniversidade Federal de Mato Grosso CuiabáMT Brazil Universidade Federal de Mato Grosso, Cuiabá, MT, Brazil.
Universidade Federal de Mato Grosso · BRUniversidade Federal do Rio Grande do Sul · BR

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Cryptococcus neoformans and C. gattii are pathogenic yeasts that cause life-threatening diseases in humans and animals. Iron is an essential nutrient for virtually every organism as it functions as a cofactor in numerous essential enzymatic reactions. In the literature, the competition for iron between microbes and mammalian hosts during infection is well documented. In this study, we used representational difference analysis (RDA) in order to gain a better understanding of how C. gattii responds to iron starvation. A total of 15 and 29 genes were identified as having altered expression levels due to iron depletion after 3 h and 12 h, respectively. Of these, eight genes were identified in both libraries. The transcripts were related to many biological processes, such as cell cycle, ergosterol metabolism, cell wall organization, transportation, translation, cell respiration and the stress response. These data suggest a remodeling of C. gattii metabolism during conditions of iron deprivation.

Indexed as

Gene Expression ProfilingStress, PhysiologicalCryptococcus gattiiGenes, FungalIronIronCryptococcus gattiiironrepresentational difference analysisyeast

Identifiers

PMID25477912
PMCPMC4204963
OpenAlexW2050881755

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.