Evidence map›Paper›PMID 25477419›Full record

ArticleGenome biology and evolution2014

Genomic diversification in strains of Rickettsia felis Isolated from different arthropods.

Joseph J Gillespie, Timothy P Driscoll, Victoria I Verhoeve, Tadanobu Utsuki, Claudia Husseneder, Vladimir N Chouljenko, Abdu F Azad, Kevin R Macaluso

Open access · goldAbstract read
In one paragraph

Article in Genome biology and evolution, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 43 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
43citing papers in PubMed, 1 pooled it
5.5field-weighted citation impact, top 3% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

43 citing papers in PubMed, 1 synthesis or guideline pooled it, 76 citations in OpenAlex.

  1. Pooled it
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  10. Metagenome diversity illuminates origins of pathogen effectors.bioRxiv : the preprint server for biology · 2023
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  12. Infection and immunity · 2022
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  15. Culture Isolate ofInternational journal of environmental research and public health · 2022
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  16. Cryptic Genes for Interbacterial Antagonism DistinguishFrontiers in cellular and infection microbiology · 2022
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  17. Review
  18. Molecular Evidence of a Broad Range of Pathogenic Bacteria inTropical medicine and infectious disease · 2021
    Article
  19. Flea-borne Rickettsia species in fleas, Caldas department, Colombia.Journal of infection in developing countries · 2020
    Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 4 institutions in 1 country.

Joseph J GillespieDepartment of Microbiology and Immunology, University of Maryland School of Medicine, Baltimore, Maryland jgillespie@som.umaryland.edu.
Timothy P DriscollDepartment of Biology, Western Carolina University.
Victoria I VerhoeveDepartment of Pathobiological Sciences, Louisiana State University, School of Veterinary Medicine.
Tadanobu UtsukiDepartment of Pathobiological Sciences, Louisiana State University, School of Veterinary Medicine.
Claudia HussenederDepartment of Entomology, Louisiana State University Agricultural Center, Baton Rouge, Louisiana.
Vladimir N ChouljenkoDepartment of Pathobiological Sciences, Louisiana State University, School of Veterinary Medicine.
Abdu F AzadDepartment of Microbiology and Immunology, University of Maryland School of Medicine, Baltimore, Maryland.
Kevin R MacalusoDepartment of Pathobiological Sciences, Louisiana State University, School of Veterinary Medicine.
Louisiana State University · USUniversity of Maryland, Baltimore · USLouisiana State University Agricultural Center · USWestern Carolina University · US

Funding

MURINE TYPHUS: VECTOR BIOLOGY AND TRANSMISSIONR01AI017828 · NIAID · UNIVERSITY OF MARYLAND BALTIMORE · PI RAHMAN, MOHAMMED SAYEEDUR · 1985 to 2022
$10.2M
Protein CoreP30GM110760 · NIGMS · LOUISIANA STATE UNIV A&M COL BATON ROUGE · PI BAINES, JOEL D. · 2014 to 2018
$5.6M
Emerging Flea-Borne Rickettsial Diseases: vector competence and transmission biologyR01AI122672 · NIAID · UNIVERSITY OF SOUTH ALABAMA · PI MACALUSO, KEVIN R. · 2016 to 2025
$4.2M
INTERSPECIFIC COMPETITION BETWEEN RICKETTSIAE IN TICKSR01AI043006 · NIAID · UNIVERSITY OF MARYLAND BALTIMORE · PI AZAD, ABDU F · 1998 to 2014
$3.3M
Arthropod host-dependent influence on rickettsial pathogenicityR56AI104923 · NIAID · LOUISIANA STATE UNIV A&M COL BATON ROUGE · PI MACALUSO, KEVIN R. · 2013 to 2013
$345k
NIAID NIH HHS HHSN272200900040CNIAID NIH HHS R01 AI017828NIAID NIH HHS R01AI017828NIAID NIH HHS R01 AI043006NIAID NIH HHS R01AI043006NIAID NIH HHS R01 AI122672NIAID NIH HHS R56 AI104923NIAID NIH HHS R56AI104923NIGMS NIH HHS P30 GM110760NIGMS NIH HHS P30GM110760PHS HHS HHSN272200900040C
6 · The paper itself

Abstract

Rickettsia felis (Alphaproteobacteria: Rickettsiales) is the causative agent of an emerging flea-borne rickettsiosis with worldwide occurrence. Originally described from the cat flea, Ctenocephalides felis, recent reports have identified R. felis from other flea species, as well as other insects and ticks. This diverse host range for R. felis may indicate an underlying genetic variability associated with host-specific strains. Accordingly, to determine a potential genetic basis for host specialization, we sequenced the genome of R. felis str. LSU-Lb, which is an obligate mutualist of the parthenogenic booklouse Liposcelis bostrychophila (Insecta: Psocoptera). We also sequenced the genome of R. felis str. LSU, the second genome sequence for cat flea-associated strains (cf. R. felis str. URRWXCal2), which are presumably facultative parasites of fleas. Phylogenomics analysis revealed R. felis str. LSU-Lb diverged from the flea-associated strains. Unexpectedly, R. felis str. LSU was found to be divergent from R. felis str. URRWXCal2, despite sharing similar hosts. Although all three R. felis genomes contain the pRF plasmid, R. felis str. LSU-Lb carries an additional unique plasmid, pLbaR (plasmid of L. bostrychophila associated Rickettsia), nearly half of which encodes a unique 23-gene integrative conjugative element. Remarkably, pLbaR also encodes a repeats-in-toxin-like type I secretion system and associated toxin, heretofore unknown from other Rickettsiales genomes, which likely originated from lateral gene transfer with another obligate intracellular parasite of arthropods, Cardinium (Bacteroidetes). Collectively, our study reveals unexpected genomic diversity across three R. felis strains and identifies several diversifying factors that differentiate facultative parasites of fleas from obligate mutualists of booklice.

Indexed as

AnimalsArthropodsBacterial ProteinsCatsGene Transfer, HorizontalGenomicsHemolysin ProteinsHumansPhylogenyPlasmidsRickettsiaceae InfectionsRickettsia felisSiphonapteraApxI toxin, BacteriaBacterial ProteinsHemolysin ProteinsbooklousefleagenomesphylogenyplasmidRickettsiales amplified genetic elementRTX-type I secretion systemtransitional group rickettsiae

Identifiers

PMID25477419
PMCPMC4316617
OpenAlexW2136765986

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.