Evidence map›Paper›PMID 25477379›Full record

ArticleNucleic acids research2015

High-resolution genetic analysis of the requirements for horizontal transmission of the ESBL plasmid from Escherichia coli O104:H4.

Yoshiharu Yamaichi, Michael C Chao, Jumpei Sasabe, Lars Clark, Brigid M Davis, Nozomi Yamamoto, Hiroshi Mori, Ken Kurokawa, Matthew K Waldor

Open access · goldAbstract read
In one paragraph

Article in Nucleic acids research, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 31 papers.

0numbers the graph read from it
0cells of the map it votes in
31citing papers in PubMed
1.7field-weighted citation impact, top 18% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

31 citing papers in PubMed, 56 citations in OpenAlex.

  1. Review
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 4 institutions in 3 countries.

Yoshiharu YamaichiDivision of Infectious Diseases, Brigham and Women's Hospital, Boston, MA 02115, USA Department of Microbiology and Immunobiology, Harvard Medical School, Boston, MA 02115, USA Institute for Integrative Biology of the Cell (I2BC), CNRS, CEA, Université Paris-Sud, Gif-sur-Yvette 91198, France yoshiharu.yamaichi@cgm.cnrs-gif.fr.
Michael C ChaoDivision of Infectious Diseases, Brigham and Women's Hospital, Boston, MA 02115, USA Department of Microbiology and Immunobiology, Harvard Medical School, Boston, MA 02115, USA.
Jumpei SasabeDivision of Infectious Diseases, Brigham and Women's Hospital, Boston, MA 02115, USA Department of Microbiology and Immunobiology, Harvard Medical School, Boston, MA 02115, USA Department of Anatomy, Keio University School of Medicine, Shinjuku-ku, Tokyo160-8582, Japan.
Lars ClarkDivision of Infectious Diseases, Brigham and Women's Hospital, Boston, MA 02115, USA Department of Microbiology and Immunobiology, Harvard Medical School, Boston, MA 02115, USA.
Brigid M DavisDivision of Infectious Diseases, Brigham and Women's Hospital, Boston, MA 02115, USA Department of Microbiology and Immunobiology, Harvard Medical School, Boston, MA 02115, USA.
Nozomi YamamotoEarth-Life Science Institute, Tokyo Institute of Technology, Meguro-ku, Tokyo 152-8551, Japan.
Hiroshi MoriDepartment of Biological Information, Tokyo Institute of Technology, Yokohama, Kanagawa 226-8501, Japan.
Ken KurokawaEarth-Life Science Institute, Tokyo Institute of Technology, Meguro-ku, Tokyo 152-8551, Japan Department of Biological Information, Tokyo Institute of Technology, Yokohama, Kanagawa 226-8501, Japan.
Matthew K WaldorDivision of Infectious Diseases, Brigham and Women's Hospital, Boston, MA 02115, USA Department of Microbiology and Immunobiology, Harvard Medical School, Boston, MA 02115, USA Howard Hughes Medical Institute, Boston, MA 02115, USA.
Brigham and Women's Hospital · USTokyo Institute of Technology · JPCommissariat à l'Énergie Atomique et aux Énergies Alternatives · FRHarvard University · US

Funding

Molecular Biology and Virulence of CTX PhageR37AI042347 · NIAID · BRIGHAM AND WOMEN'S HOSPITAL · PI WALDOR, MATTHEW K · 2008 to 2017
$3.8M
Howard Hughes Medical Institute AI-042347NIAID NIH HHS R37 AI042347
6 · The paper itself

Abstract

Horizontal dissemination of the genes encoding extended spectrum beta-lactamases (ESBLs) via conjugative plasmids is facilitating the increasingly widespread resistance of pathogens to beta-lactam antibiotics. However, there is relatively little known about the regulatory factors and mechanisms that govern the spread of these plasmids. Here, we carried out a high-throughput, transposon insertion site sequencing analysis (TnSeq) to identify genes that enable the maintenance and transmission of pESBL, an R64 (IncI1)-related resistance plasmid that was isolated from Escherichia coli O104:H4 linked to a recent large outbreak of gastroenteritis. With a few exceptions, the majority of the genes identified as required for maintenance and transmission of pESBL matched those of their previously defined R64 counterparts. However, our analyses of the high-density transposon insertion library in pESBL also revealed two very short and linked regions that constitute a previously unrecognized regulatory system controlling spread of IncI1 plasmids. In addition, we investigated the function of the pESBL-encoded M.EcoGIX methyltransferase, which is also encoded by many other IncI1 and IncF plasmids. This enzyme proved to protect pESBL from restriction in new hosts, suggesting it aids in expanding the plasmid's host range. Collectively, our work illustrates the power of the TnSeq approach to enable rapid and comprehensive analyses of plasmid genes and sequences that facilitate the dissemination of determinants of antibiotic resistance.

Indexed as

Gene Transfer, HorizontalDNA Transposable ElementsEscherichia coliGene LibraryGenes, BacterialHigh-Throughput Nucleotide SequencingPlasmidsSequence Analysis, DNADNA Transposable Elements

Identifiers

PMID25477379
PMCPMC4288162
OpenAlexW2108829052

What OpenQuestion holds

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LicenceCC BY-NC
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.