Evidence map›Paper›PMID 25477249›Full record

ArticleIntegrative biology : quantitative biosciences from nano to macro2015

Microfluidics-based selection of red-fluorescent proteins with decreased rates of photobleaching.

Kevin M Dean, Jennifer L Lubbeck, Lloyd M Davis, Chola K Regmi, Prem P Chapagain, Bernard S Gerstman, Ralph Jimenez, Amy E Palmer

Abstract read
In one paragraph

Article in Integrative biology : quantitative biosciences from nano to macro, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 14 papers.

0numbers the graph read from it
0cells of the map it votes in
14citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

14 citing papers in PubMed.

  1. Article
  2. Article
  3. Review
  4. Rapid directed molecular evolution of fluorescent proteins in mammalian cells.Protein science : a publication of the Protein Society · 2022
    Article
  5. Review
  6. Article
  7. Article
  8. Directed evolution of excited state lifetime and brightness in FusionRed using a microfluidic sorter.Integrative biology : quantitative biosciences from nano to macro · 2018
    Article
  9. Enhancing fluorescent protein photostability through robot-assisted photobleaching.Integrative biology : quantitative biosciences from nano to macro · 2018
    Article
  10. Article
  11. Article
  12. Review
  13. Article
  14. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors.

Kevin M DeanBioFrontiers Institute, University of Colorado, Boulder, CO, USA. amy.palmer@colorado.edu.
Jennifer L Lubbeck
Lloyd M Davis
Chola K Regmi
Prem P Chapagain
Bernard S Gerstman
Ralph Jimenez
Amy E Palmer

Funding

Predoctoral Training Molecular BiophysicsT32GM065103 · NIGMS · UNIVERSITY OF COLORADO AT BOULDER · PI FALKE, JOSEPH J · 2002 to 2021
$4.3M
Microfluidics-based Selections for the Optimization of Red Fluorescent ProteinsR01GM083849 · NIGMS · UNIVERSITY OF COLORADO · PI JIMENEZ, RALPH, PALMER, AMY E · 2008 to 2011
$1.5M
Computational Investigations of Monomeric Variants of Red Fluorescent ProteinsSC3GM096903 · NIGMS · FLORIDA INTERNATIONAL UNIVERSITY · PI CHAPAGAIN, PREM P · 2011 to 2014
$425k
NIGMS NIH HHS GM083849NIGMS NIH HHS GM096903NIGMS NIH HHS R01 GM083849NIGMS NIH HHS SC3 GM096903NIGMS NIH HHS T32 GM065103
6 · The paper itself

Abstract

Fluorescent proteins offer exceptional labeling specificity in living cells and organisms. Unfortunately, their photophysical properties remain far from ideal for long-term imaging of low-abundance cellular constituents, in large part because of their poor photostability. Despite widespread engineering efforts, improving the photostability of fluorescent proteins remains challenging due to lack of appropriate high-throughput selection methods. Here, we use molecular dynamics guided mutagenesis in conjunction with a recently developed microfluidic-based platform, which sorts cells based on their fluorescence photostability, to identify red fluorescent proteins with decreased photobleaching from a HeLa cell-based library. The identified mutant, named Kriek, has 2.5- and 4-fold higher photostability than its progenitor, mCherry, under widefield and confocal illumination, respectively. Furthermore, the results provide insight into mechanisms for enhancing photostability and their connections with other photophysical processes, thereby providing direction for ongoing development of fluorescent proteins with improved single-molecule and low-copy imaging capabilities.

Indexed as

PhotobleachingDirected Molecular EvolutionFluorescent DyesHeLa CellsHumansLab-On-A-Chip DevicesLuminescent ProteinsMicrofluidicsMolecular Dynamics SimulationMutagenesisProtein StabilityRed Fluorescent ProteinFluorescent DyesLuminescent ProteinsRed Fluorescent Protein

Identifiers

PMID25477249
PMCPMC4323946

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.