Evidence map›Paper›PMID 25477005›Full record

ArticleChembiochem : a European journal of chemical biology2015

Elucidating the catalytic subunit composition of distinct proteasome subtypes: a crosslinking approach employing bifunctional activity-based probes.

Kimberly Cornish Carmony, Lalit Kumar Sharma, Do-Min Lee, Ji Eun Park, Wooin Lee, Kyung-Bo Kim

Abstract read
In one paragraph

Article in Chembiochem : a European journal of chemical biology, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

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Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed.

  1. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors.

Kimberly Cornish CarmonyDepartment of Pharmaceutical Sciences, College of Pharmacy, University of Kentucky, 789 South Limestone Street, Lexington, KY 40536-0596 (USA).
Lalit Kumar Sharma
Do-Min Lee
Ji Eun Park
Wooin Lee
Kyung-Bo Kim

Funding

Chemical Probes of Immunoproteasome Function in CancerR01CA128903 · NCI · UNIVERSITY OF KENTUCKY · PI KIM, KYUNG BO · 2010 to 2014
$1.5M
Targeting the immunoproteasome as a novel colorectal cancer therapyR15CA156601 · NCI · UNIVERSITY OF KENTUCKY · PI LEE, WOOIN · 2011 to 2011
$446k
NCI NIH HHS R01 CA128903NCI NIH HHS R15 CA156601
6 · The paper itself

Abstract

In addition to two well-recognized proteasome subtypes-constitutive proteasomes and immunoproteasomes-mounting evidence also suggests the existence of intermediate proteasome subtypes containing unconventional mixtures of catalytic subunits. Although they appear to play unique biological roles, the lack of practical methods for detecting distinct proteasome subtypes has limited functional investigations. Here, we report the development of activity-based probes that crosslink two catalytic subunits within intact proteasome complexes. Identification of the crosslinked subunit pairs provides direct evidence of the catalytic subunit composition of proteasomes. Using these probes, we found that U266 multiple myeloma cells contain intermediate proteasomes comprising both β1i and β2, but not β1 and β2i, consistent with previous findings with other cell types. Our bifunctional probes can be utilized in functional investigations of distinct proteasome subtypes in various biological settings.

Indexed as

Molecular ProbesCatalytic DomainCell Line, TumorCross-Linking ReagentsHumansInhibitory Concentration 50Molecular Probe TechniquesMultiple MyelomaPolyethylene GlycolsProteasome Endopeptidase ComplexProteasome InhibitorsThreonineCross-Linking ReagentsMolecular ProbesPolyethylene GlycolsProteasome Endopeptidase ComplexProteasome InhibitorsThreonineconstitutive proteasomecrosslinking agentsimmunoproteasomeintermediate proteasomeproteasome subtype

Identifiers

PMID25477005
PMCPMC4415169

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.