Evidence map›Paper›PMID 25476067›Full record

ArticleMicrobes and environments2014

Relationship between soil type and N₂O reductase genotype (nosZ) of indigenous soybean bradyrhizobia: nosZ-minus populations are dominant in Andosols.

Yoko Shiina, Manabu Itakura, Hyunseok Choi, Yuichi Saeki, Masahito Hayatsu, Kiwamu Minamisawa

Open access · bronzeAbstract read
In one paragraph

Article in Microbes and environments, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 25 papers.

0numbers the graph read from it
0cells of the map it votes in
25citing papers in PubMed
5.6field-weighted citation impact, top 5% of its field
1 · What the graph read from it

What it found

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2 · The registry

The trial behind it

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3 · Its place in the literature

Who cites it

25 citing papers in PubMed, 40 citations in OpenAlex.

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  19. Complete Genome Sequence ofGenome announcements · 2017
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4 · The record

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5 · Who and what money

Authors and funding

6 authors at 3 institutions in 1 country.

Yoko ShiinaGraduate School of Life Sciences, Tohoku University.
Manabu Itakura
Hyunseok Choi
Yuichi Saeki
Masahito Hayatsu
Kiwamu Minamisawa
Tohoku University · JPNational Institute for Agro-Environmental Sciences · JPUniversity of Miyazaki · JP

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Bradyrhizobium japonicum strains that have the nosZ gene, which encodes N2O reductase, are able to mitigate N2O emissions from soils (15). To examine the distribution of nosZ genotypes among Japanese indigenous soybean bradyrhizobia, we isolated bradyrhizobia from the root nodules of soybean plants inoculated with 32 different soils and analyzed their nosZ and nodC genotypes. The 1556 resultant isolates were classified into the nosZ+/nodC+ genotype (855 isolates) and nosZ-/nodC+ genotype (701 isolates). The 11 soil samples in which nosZ- isolates significantly dominated (P < 0.05; the χ(2) test) were all Andosols (a volcanic ash soil prevalent in agricultural fields in Japan), whereas the 17 soil samples in which nosZ+ isolates significantly dominated were mainly alluvial soils (non-volcanic ash soils). This result was supported by a principal component analysis of environmental factors: the dominance of the nosZ- genotype was positively correlated with total N, total C, and the phosphate absorption coefficient in the soils, which are soil properties typical of Andosols. Internal transcribed spacer sequencing of representative isolates showed that the nosZ+ and nosZ- isolates of B. japonicum fell mainly into the USDA110 (BJ1) and USDA6 (BJ2) groups, respectively. These results demonstrated that the group lacking nosZ was dominant in Andosols, which can be a target soil type for an N2O mitigation strategy in soybean fields. We herein discussed how the nosZ genotypes of soybean bradyrhizobia depended on soil types in terms of N2O respiration selection and genomic determinants for soil adaptation.

Indexed as

Genetic VariationSoil MicrobiologyCarbonCluster AnalysisDNA, BacterialDNA, Ribosomal SpacerGenotypeGlycine maxJapanMolecular Sequence DataNitrogenOxidoreductasesPhosphatesPhylogenyRoot Nodules, PlantSequence Analysis, DNACarbonDNA, BacterialDNA, Ribosomal SpacerNitrogennitrous oxide reductaseOxidoreductasesPhosphatesSoil

Identifiers

PMID25476067
PMCPMC4262367
OpenAlexW2148591671

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LicenceCC BY
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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.