Evidence map›Paper›PMID 25476005›Full record

ArticleJournal of neurology, neurosurgery, and psychiatry2015

Validation of genetic modifiers for Duchenne muscular dystrophy: a multicentre study assessing SPP1 and LTBP4 variants.

Janneke C van den Bergen, Monika Hiller, Stefan Böhringer, Linda Vijfhuizen, Hendrika B Ginjaar, Amina Chaouch, Kate Bushby, Volker Straub, Mariacristina Scoto, Sebahattin Cirak and 12 more

Open access · hybridAbstract readMulticenter StudyValidation Study
In one paragraph

Article in Journal of neurology, neurosurgery, and psychiatry, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 61 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
61citing papers in PubMed, 1 pooled it
4.6field-weighted citation impact, top 4% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

61 citing papers in PubMed, 1 synthesis or guideline pooled it, 97 citations in OpenAlex.

  1. Pooled it
  2. Trial
  3. Article
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  5. Review
  6. Article
  7. A cellular and molecular spatial atlas of dystrophic muscle.Proceedings of the National Academy of Sciences of the United States of America · 2023
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  14. Genes · 2022
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1 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

22 authors at 7 institutions in 6 countries.

Janneke C van den BergenDepartment of Neurology, Leiden University Medical Center, Leiden, The Netherlands.
Monika HillerDepartment of Human Genetics, Leiden University Medical Center, Leiden, The Netherlands.
Stefan BöhringerDepartment of Medical Statistics and Bioinformatics, Leiden University Medical Center, Leiden, The Netherlands.
Linda VijfhuizenDepartment of Clinical Genetics, Leiden University Medical Center, Leiden, The Netherlands.
Hendrika B GinjaarDepartment of Clinical Genetics, Leiden University Medical Center, Leiden, The Netherlands.
Amina ChaouchInstitute of Human Genetics, Newcastle University, International Centre for Life, Central Parkway, Newcastle upon Tyne, UK.
Kate BushbyInstitute of Human Genetics, Newcastle University, International Centre for Life, Central Parkway, Newcastle upon Tyne, UK.
Volker StraubInstitute of Human Genetics, Newcastle University, International Centre for Life, Central Parkway, Newcastle upon Tyne, UK.
Mariacristina ScotoDubowitz Neuromuscular Centre, University College London, London, UK.
Sebahattin CirakDubowitz Neuromuscular Centre, University College London, London, UK Children's National Medical Center, Research Center for Genetic Medicine, Washington DC, USA.
Véronique HumbertclaudeLaboratoire de Génétique de Maladies Rares, CHU Montpellier, Université Montpellier 1, UFR Médecine, and Inserm U827, Montpellier, France.
Mireille ClaustresLaboratoire de Génétique de Maladies Rares, CHU Montpellier, Université Montpellier 1, UFR Médecine, and Inserm U827, Montpellier, France.
Chiara ScottonDepartment of Medical Sciences, Section of Microbiology and Medical Genetics, University of Ferrara, Ferrara, Italy.
Chiara PassarelliPaediatric Hospital Bambino Gesù, Rome, Italy.ORCID http://orcid.org/0000-0001-7919-4626
Hanns LochmüllerInstitute of Human Genetics, Newcastle University, International Centre for Life, Central Parkway, Newcastle upon Tyne, UK.
Francesco MuntoniDubowitz Neuromuscular Centre, University College London, London, UK.
Sylvie Tuffery-GiraudLaboratoire de Génétique de Maladies Rares, CHU Montpellier, Université Montpellier 1, UFR Médecine, and Inserm U827, Montpellier, France.
Alessandra FerliniDepartment of Medical Sciences, Section of Microbiology and Medical Genetics, University of Ferrara, Ferrara, Italy.
Annemieke M Aartsma-RusDepartment of Human Genetics, Leiden University Medical Center, Leiden, The Netherlands.
Jan J G M VerschuurenDepartment of Neurology, Leiden University Medical Center, Leiden, The Netherlands.
Peter Ac 't HoenDepartment of Human Genetics, Leiden University Medical Center, Leiden, The Netherlands.
Pietro SpitaliDepartment of Human Genetics, Leiden University Medical Center, Leiden, The Netherlands.
Leiden University Medical Center · NLCentre for Life · GBInserm · FRUniversity College London · GBUniversity of Ferrara · ITBambino Gesù Children's Hospital · ITChildren's National · US

Funding

Medical Research CouncilWellcome Trust
6 · The paper itself

Abstract

objectiveDuchenne muscular dystrophy (DMD) is characterised by progressive muscle weakness. It has recently been reported that single nucleotide polymorphisms (SNPs) located in the SPP1 and LTBP4 loci can account for some of the inter-individual variability observed in the clinical disease course. The validation of genetic association in large independent cohorts is a key process for rare diseases in order to qualify prognostic biomarkers and stratify patients in clinical trials.

methodsDuchenne patients from five European neuromuscular centres were included. Information about age at wheelchair dependence and steroid use was gathered. Melting curve analysis of PCR fragments or Sanger sequencing were used to genotype SNP rs28357094 in the SPP1 gene in 336 patients. The genotype of SNPs rs2303729, rs1131620, rs1051303 and rs10880 in the LTBP4 locus was determined in 265 patients by mass spectrometry. For both loci, a multivariate analysis was performed, using genotype/haplotype, steroid use and cohort as covariates.

resultsWe show that corticosteroid treatment and the IAAM haplotype of the LTBP4 gene are significantly associated with prolonged ambulation in patients with DMD. There was no significant association between the SNP rs28357094 in the SPP1 gene and the age of ambulation loss.

conclusionsThis study underlines the importance of replicating genetic association studies for rare diseases in large independent cohorts to identify the most robust associations. We anticipate that genotyping of validated genetic associations will become important for the design and interpretation of clinical trials.

Indexed as

Age FactorsChildCohort StudiesDisease ProgressionEuropeFemaleGenotypeHumansLatent TGF-beta Binding ProteinsMaleMuscular Dystrophy, DuchenneOsteopontinPolymorphism, Single NucleotidePrognosisReproducibility of ResultsSteroidsLatent TGF-beta Binding ProteinsLTBP4 protein, humanOsteopontinSPP1 protein, humanSteroidsDYSTROPHINGENETICSMUSCLE DISEASEMUSCULAR DYSTROPHYNEUROMUSCULAR

Identifiers

PMID25476005
PMCPMC4602257
OpenAlexW2145619845

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.