Evidence map›Paper›PMID 25474681›Full record

ArticlePloS one2014

Regulation of C. elegans neuronal differentiation by the ZEB-family factor ZAG-1 and the NK-2 homeodomain factor CEH-28.

Kalpana Ramakrishnan, Peter G Okkema

Open access · goldAbstract read
In one paragraph

Article in PloS one, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 10 papers.

0numbers the graph read from it
0cells of the map it votes in
10citing papers in PubMed
0.5field-weighted citation impact, top 43% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

10 citing papers in PubMed, 22 citations in OpenAlex.

  1. Article
  2. Single-cell transcriptomic profiling ofbioRxiv : the preprint server for biology · 2025
    Article
  3. Article
  4. Deciphering the underlying mechanisms of the pharyngeal pumping motions inProceedings of the National Academy of Sciences of the United States of America · 2024
    Article
  5. Article
  6. Article
  7. Article
  8. Article
  9. Article
  10. Characterization of the crawling activity of Caenorhabditis elegans using a Hidden Markov model.Theory in biosciences = Theorie in den Biowissenschaften · 2015
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

2 authors at 1 institution in 1 country.

Kalpana RamakrishnanDepartment of Biological Sciences, University of Illinois at Chicago, Chicago, Illinois, United States of America.
Peter G OkkemaDepartment of Biological Sciences, University of Illinois at Chicago, Chicago, Illinois, United States of America.
University of Illinois Chicago · US

Funding

Enhancing and expanding the CGC Strain CollectionP40OD010440 · OD · UNIVERSITY OF MINNESOTA · PI Aric L Daul, Ann E. Rougvie · 2012 to 2026
$7.5M
Function and regulation of T-box factors in C. elegansR01GM082865 · NIGMS · UNIVERSITY OF ILLINOIS AT CHICAGO · PI OKKEMA, PETER G · 2007 to 2010
$1.3M
NIGMS NIH HHS R01 GM082865NIGMS NIH HHS R01 GM82865NIH HHS P40 OD010440
6 · The paper itself

Abstract

The C. elegans pharyngeal neuron M4 is a multi-functional cell that acts as a cholinergic motor neuron to stimulate peristaltic pharyngeal muscle contraction and as a neuroendocrine cell secreting neuropeptides and growth factors to affect other cells both inside and outside the pharynx. The conserved transcription factors ZAG-1 and CEH-28 are co-expressed in M4 through most of development, and here we examine how these factors contribute to M4 differentiation. We find ZAG-1 functions upstream of CEH-28 in a branched pathway to activate expression of different sets of M4 differentiation markers. CEH-28 activates expression of the growth factor genes dbl-1 and egl-17, and the neuropeptide genes flp-5 and flp-2, while ZAG-1 activates expression of the serotonin receptor ser-7, as well as expression of ceh-28 and its downstream targets. Other markers of M4 differentiation are expressed normally in both zag-1 and ceh-28 mutants, including the neuropeptide gene flp-21 and the acetylcholine biosynthetic gene unc-17. Unlike ceh-28 mutants, zag-1 mutants completely lack peristaltic muscle contractions resulting from broader defects in M4 differentiation. Despite these defects, neither ZAG-1 nor CEH-28 are terminal selectors of the M4 phenotype, and we suggest they function in a hierarchy to regulate different aspects of M4 differentiation.

Indexed as

Cell DifferentiationAnimalsArecolineCaenorhabditis elegansCaenorhabditis elegans ProteinsFeeding BehaviorHomeodomain ProteinsIntercellular Signaling Peptides and ProteinsLarvaMutationNeuronsNeuropeptidesPeristalsisPromoter Regions, GeneticRepressor ProteinsSerotoninArecolineCaenorhabditis elegans ProteinsCEH-28 protein, C elegansDbl-1 protein, C elegansEgl-17 protein, C elegansHomeodomain ProteinsIntercellular Signaling Peptides and ProteinsNeuropeptidesRepressor ProteinsSerotoninSerotonin Receptor AgonistsTranscription FactorsTransforming Growth Factor betaUnc-17 protein, C elegansVesicular Acetylcholine Transport ProteinsZAG-1 protein, C elegans

Identifiers

PMID25474681
PMCPMC4256384
OpenAlexW1970373879

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.