Evidence map›Paper›PMID 25474584›Full record

ArticleBMC bioinformatics2014

Enhancing the accuracy of knowledge discovery: a supervised learning method.

Liangxi Cheng, Hongfei Lin, Feng Zhou, Zhihao Yang, Jian Wang

Abstract read
In one paragraph

Article in BMC bioinformatics, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

0numbers the graph read from it
0cells of the map it votes in
0citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

0 citing papers in PubMed.

No citing paper in PubMed yet.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors.

Liangxi Cheng
Hongfei Lin
Feng Zhou
Zhihao Yang
Jian Wang

Funding

StatisticsP50CA086355 · NCI · MASSACHUSETTS GENERAL HOSPITAL · PI WEISSLEDER, MD, PHD, RALPH · 2000 to 2015
$27.8M
NCI NIH HHS P50 CA086355
6 · The paper itself

Abstract

backgroundThe amount of biomedical literature available is growing at an explosive speed, but a large amount of useful information remains undiscovered in it. Researchers can make informed biomedical hypotheses through mining this literature. Unfortunately, popular mining methods based on co-occurrence produce too many target concepts, leading to the declining relevance ranking of the potential target concepts.

methodsThis paper presents a new method for selecting linking concepts which exploits statistical and textual features to represent each linking concept, and then classifies them as relevant or irrelevant to the starting concepts. Relevant linking concepts are then used to discover target concepts.

resultsThrough an evaluation it is observed textual features improve the results obtained with only statistical features. We successfully replicate Swanson's two classic discoveries and find the rankings of potentially relevant target concepts are relatively high.

conclusionsThe number of target concepts is greatly reduced and potentially relevant target concepts gain higher ranking by adopting only relevant linking concepts. Thus, the proposed method has the potential to help biomedical experts find the most useful and valuable target concepts effectively.

Indexed as

Data Interpretation, StatisticalData MiningMEDLINESupport Vector Machine

Identifiers

PMID25474584
PMCPMC4243114

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.