Evidence map›Paper›PMID 25473117›Full record

ArticleMolecular biology of the cell2015

Single-cell variation leads to population invariance in NF-κB signaling dynamics.

Jacob J Hughey, Miriam V Gutschow, Bryce T Bajar, Markus W Covert

Abstract read
In one paragraph

Article in Molecular biology of the cell, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 40 papers.

0numbers the graph read from it
0cells of the map it votes in
40citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

40 citing papers in PubMed.

  1. Article
  2. Article
  3. Article
  4. Autonomous Oscillations of NF-κB.Advances in experimental medicine and biology · 2026
    Review
  5. Article
  6. Article
  7. Article
  8. Article
  9. Review
  10. Article
  11. Review
  12. Review
  13. Review
  14. Article
  15. Article
  16. Article
  17. Article
  18. Article
  19. Review
  20. Stimulus-specificity in the Responses of Immune Sentinel Cells.Current opinion in systems biology · 2019
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors.

Jacob J HugheyDepartment of Bioengineering, Stanford University, Stanford, CA 94305-4125.
Miriam V GutschowDepartment of Bioengineering, Stanford University, Stanford, CA 94305-4125.
Bryce T BajarDepartment of Bioengineering, Stanford University, Stanford, CA 94305-4125.
Markus W CovertDepartment of Bioengineering, Stanford University, Stanford, CA 94305-4125 mcovert@stanford.edu.

Funding

TRAINING & OUTREACH COREP50GM107615 · NIGMS · STANFORD UNIVERSITY · PI COVERT, MARKUS W · 2013 to 2017
$10.9M
PEARLS DisseminationR18DP001150 · DP · UNIVERSITY OF WASHINGTON · PI SNOWDEN, MARK · 2007 to 2009
$1.2M
Combining Computational and Experimentation to Interrogate NF-kappaB SignalingR00CA125994 · NCI · STANFORD UNIVERSITY · PI COVERT, MARKUS W · 2009 to 2011
$740k
New methods for monitoring the immune system, in individual cells and in vivoR21AI104305 · NIAID · STANFORD UNIVERSITY · PI COVERT, MARKUS W · 2012 to 2013
$439k
NCCDPHP CDC HHS 5DP1LM01150NCI NIH HHS R00 CA125994NCI NIH HHS R00CA125994NIAID NIH HHS 1R21AI104305NIAID NIH HHS R21 AI104305NIGMS NIH HHS P50 GM107615
6 · The paper itself

Abstract

The activation dynamics of nuclear factor (NF)-κB have been shown to affect downstream gene expression. On activation, NF-κB shuttles back and forth across the nuclear envelope. Many dynamic features of this shuttling have been characterized, and most features vary significantly with respect to ligand type and concentration. Here, we report an invariant feature with regard to NF-κB dynamics in cellular populations: the distribution--the average, as well as the variance--of the time between two nuclear entries (the period). We find that this period is conserved, regardless of concentration and across several different ligands. Intriguingly, the distributions observed at the population level are not observed in individual cells over 20-h time courses. Instead, the average period of NF-κB nuclear translocation varies considerably among single cells, and the variance is much smaller within a cell than that of the population. Finally, analysis of daughter-cell pairs and isogenic populations indicates that the dynamics of the NF-κB response is heritable but diverges over multiple divisions, on the time scale of weeks to months. These observations are contrary to the existing theory of NF-κB dynamics and suggest an additional level of control that regulates the overall distribution of translocation timing at the population level.

Indexed as

Active Transport, Cell NucleusAnimalsCell NucleusKineticsMiceNF-kappa BProtein TransportSignal TransductionSingle-Cell AnalysisNF-kappa B

Identifiers

PMID25473117
PMCPMC4310747

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC-SA
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.