Evidence map›Paper›PMID 25472840›Full record

ArticleProceedings of the National Academy of Sciences of the United States of America2014

Functionally compromised CHD7 alleles in patients with isolated GnRH deficiency.

Ravikumar Balasubramanian, Jin-Ho Choi, Ludmila Francescatto, Jason Willer, Edward R Horton, Eleni P Asimacopoulos, Konstantina M Stankovic, Lacey Plummer, Cassandra L Buck, Richard Quinton and 9 more

Open access · bronzeAbstract read
In one paragraph

Article in Proceedings of the National Academy of Sciences of the United States of America, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 48 papers.

0numbers the graph read from it
0cells of the map it votes in
48citing papers in PubMed
2.8field-weighted citation impact, top 9% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

48 citing papers in PubMed, 77 citations in OpenAlex.

  1. Genetics of Idiopathic Hypogonadotropic HypogonadismJournal of clinical research in pediatric endocrinology · 2026
    Review
  2. Review
  3. Review
  4. [Expert consensus on auditory intervention and language rehabilitation of CHARGE syndrome].Lin chuang er bi yan hou tou jing wai ke za zhi = Journal of clinical otorhinolaryngology head and neck surgery · 2025
    Article
  5. Article
  6. Review
  7. Genes · 2024
    Article
  8. Article
  9. Article
  10. Review
  11. Article
  12. Article
  13. Expanding the reproductive organ phenotype of CHD7-spectrum disorder.American journal of medical genetics. Part A · 2023
    Article
  14. Article
  15. Article
  16. Article
  17. The CHARGE syndrome ortholog CHD-7 regulates TGF-β pathways inProceedings of the National Academy of Sciences of the United States of America · 2022
    Article
  18. Article
  19. Article
  20. Craniofacial and cardiac defects inFrontiers in cell and developmental biology · 2022
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

19 authors at 8 institutions in 5 countries.

Ravikumar BalasubramanianHarvard Reproductive Endocrine Sciences Center & Reproductive Endocrine Unit of the Department of Medicine, and Medicine.
Jin-Ho ChoiHarvard Reproductive Endocrine Sciences Center & Reproductive Endocrine Unit of the Department of Medicine, and Department of Pediatrics, Asan Medical Center Children's Hospital, University of Ulsan College of Medicine, Seoul 138-736, Korea;
Ludmila FrancescattoCenter for Human Disease Modeling, Department of Cell Biology and Pediatrics, Duke University, Durham, NC 27710;
Jason WillerCenter for Human Disease Modeling, Department of Cell Biology and Pediatrics, Duke University, Durham, NC 27710;
Edward R HortonHarvard Reproductive Endocrine Sciences Center & Reproductive Endocrine Unit of the Department of Medicine, and.
Eleni P AsimacopoulosDepartment of Otolaryngology, Massachusetts Eye & Ear Infirmary, Boston, MA 02114; Otology and Laryngology, and.
Konstantina M StankovicDepartment of Otolaryngology, Massachusetts Eye & Ear Infirmary, Boston, MA 02114; Otology and Laryngology, and.
Lacey PlummerHarvard Reproductive Endocrine Sciences Center & Reproductive Endocrine Unit of the Department of Medicine, and.
Cassandra L BuckHarvard Reproductive Endocrine Sciences Center & Reproductive Endocrine Unit of the Department of Medicine, and.
Richard QuintonInstitute of Genetic Medicine, Newcastle University, Newcastle-upon-Tyne NE1 3BZ, United Kingdom;
Todd D NebesioDepartment of Pediatrics, Riley Hospital for Children, Indiana University School of Medicine, Indianapolis, IN 46202;
Veronica MericqInstitute of Maternal and Child Research, University of Chile, Casilla 226-3, Santiago, Chile; and.
Paulina M MerinoInstitute of Maternal and Child Research, University of Chile, Casilla 226-3, Santiago, Chile; and.ORCID http://orcid.org/0000-0001-8725-6348
Brian F MeyerDepartment of Genetics, King Faisal Specialist Hospital & Research Centre, Riyadh 11211, Saudi Arabia.
Dorota MoniesDepartment of Genetics, King Faisal Specialist Hospital & Research Centre, Riyadh 11211, Saudi Arabia.
James F GusellaCenter for Human Genetic Research, Massachusetts General Hospital, Boston, MA 02114; Departments of Genetics, Harvard Medical School, Boston, MA 20115;
Nada Al TassanDepartment of Genetics, King Faisal Specialist Hospital & Research Centre, Riyadh 11211, Saudi Arabia.
Nicholas KatsanisCenter for Human Disease Modeling, Department of Cell Biology and Pediatrics, Duke University, Durham, NC 27710;
William F CrowleyHarvard Reproductive Endocrine Sciences Center & Reproductive Endocrine Unit of the Department of Medicine, and Medicine, wcrowley@partners.org.
Duke University · USKing Faisal Specialist Hospital & Research Centre · SAMassachusetts Eye and Ear Infirmary · USUniversity of Chile · CLHarvard University · USNewcastle University · GBRiley Hospital for Children · USUlsan College · KR

Funding

RAPID GENE DISCOVERYP01GM061354 · NIGMS · BRIGHAM AND WOMEN'S HOSPITAL · PI GUSELLA, JAMES F · 2001 to 2019
$24.3M
The Genetic Determinants of Human GNRH DeficiencyU54HD028138 · NICHD · MASSACHUSETTS GENERAL HOSPITAL · PI CROWLEY, WILLIAM FRANCIS · 2000 to 2013
$19.9M
The Genetic Determinants of Human GNRH DeficiencyP50HD028138 · NICHD · MASSACHUSETTS GENERAL HOSPITAL · PI CROWLEY, WILLIAM FRANCIS · 2014 to 2020
$12.9M
Research Project 3P50DK096415 · NIDDK · DUKE UNIVERSITY · PI HAUSER, MICHAEL A · 2012 to 2016
$4.2M
Understanding Noise-Induced Delayed Primary Degeneration of the Auditory NerveK08DC010419 · NIDCD · MASSACHUSETTS EYE AND EAR INFIRMARY · PI STANKOVIC, KONSTANTINA M · 2010 to 2014
$1.2M
Biologic Roles of Novel Axonal Guidance Genes in Isolated GnRH DeficiencyK23HD077043 · NICHD · MASSACHUSETTS GENERAL HOSPITAL · PI BALASUBRAMANIAN, RAVIKUMAR · 2014 to 2018
$759k
NICHD NIH HHS K23 HD077043NICHD NIH HHS P50 HD028138NICHD NIH HHS U54 HD028138NIDCD NIH HHS K08 DC010419NIDDK NIH HHS P50 DK096415NIGMS NIH HHS P01 GM061354
6 · The paper itself

Abstract

Inactivating mutations in chromodomain helicase DNA binding protein 7 (CHD7) cause CHARGE syndrome, a severe multiorgan system disorder of which Isolated gonadotropin-releasing hormone (GnRH) deficiency (IGD) is a minor feature. Recent reports have described predominantly missense CHD7 alleles in IGD patients, but it is unclear if these alleles are relevant to causality or overall genetic burden of Kallmann syndrome (KS) and normosmic form of IGD. To address this question, we sequenced CHD7 in 783 well-phenotyped IGD patients lacking full CHARGE features; we identified nonsynonymous rare sequence variants in 5.2% of the IGD cohort (73% missense and 27% splice variants). Functional analyses in zebrafish using a surrogate otolith assay of a representative set of these CHD7 alleles showed that rare sequence variants observed in controls showed no altered function. In contrast, 75% of the IGD-associated alleles were deleterious and resulted in both KS and normosmic IGD. In two families, pathogenic mutations in CHD7 coexisted with mutations in other known IGD genes. Taken together, our data suggest that rare deleterious CHD7 alleles contribute to the mutational burden of patients with both KS and normosmic forms of IGD in the absence of full CHARGE syndrome. These findings (i) implicate a unique role or preferential sensitivity for CHD7 in the ontogeny of GnRH neurons, (ii) reiterate the emerging genetic complexity of this family of IGD disorders, and (iii) demonstrate how the coordinated use of well-phenotyped cohorts, families, and functional studies can inform genetic architecture and provide insights into the developmental biology of cellular systems.

Indexed as

PhenotypeAnimalsBase SequenceCHARGE SyndromeDeficiency DiseasesDNA-Binding ProteinsDNA HelicasesGene Knockdown TechniquesGonadotropin-Releasing HormoneHumansKallmann SyndromeMolecular Sequence DataMutation, MissenseOtolithic MembraneProtein Structure, TertiarySequence Analysis, DNACHD7 protein, humanDNA-Binding ProteinsDNA HelicasesGonadotropin-Releasing HormoneCHARGE syndromeCHD7idiopathic hypogonadotropic hypogondismKallmann syndromemissense mutations

Identifiers

PMID25472840
PMCPMC4273325
OpenAlexW2032218533

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.