Evidence map›Paper›PMID 25471516›Full record

ArticleJournal of human genetics2015

Sousse: extreme genetic heterogeneity in North Africa.

Karima Fadhlaoui-Zid, Ralph Garcia-Bertrand, Miguel A Alfonso-Sánchez, Ramzi Zemni, Amel Benammar-Elgaaied, Rene J Herrera

Abstract readComparative Study
PubMed Publisher
In one paragraph

Article in Journal of human genetics, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 13 papers.

0numbers the graph read from it
0cells of the map it votes in
13citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

13 citing papers in PubMed.

  1. Article
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  6. Human glutathione peroxidase codon 198 variant increases nasopharyngeal carcinoma risk and progression.European archives of oto-rhino-laryngology : official journal of the European Federation of Oto-Rhino-Laryngological Societies (EUFOS) : affiliated with the German Society for Oto-Rhino-Laryngology - Head and Neck Surgery · 2021
    Article
  7. Article
  8. Contribution of Nitric oxide synthase 3 genetic variants to nasopharyngeal carcinoma risk and progression in a Tunisian population.European archives of oto-rhino-laryngology : official journal of the European Federation of Oto-Rhino-Laryngological Societies (EUFOS) : affiliated with the German Society for Oto-Rhino-Laryngology - Head and Neck Surgery · 2019
    Article
  9. Article
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  12. Genetic variation in Tunisia in the context of human diversity worldwide.American journal of physical anthropology · 2016
    Article
  13. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors.

Karima Fadhlaoui-Zid1] Biology Department, Colorado College, Colorado Springs, CO, USA [2] Laboratory of Genetics, Immunology, and Human Pathologies, Faculty of Science of Tunis, University Tunis El Manar, Tunis, Tunisia.
Ralph Garcia-BertrandBiology Department, Colorado College, Colorado Springs, CO, USA.
Miguel A Alfonso-SánchezDepartamento de Genética y Antropología Fı sica, Facultad de Ciencia y Tecnología, Universidad del País Vasco, Bilbao, Bizkaia, Spain.
Ramzi ZemniLaboratory of Immunogenetics, Faculty of Medicine of Sousse, University of Sousse, Sousse, Tunisia.
Amel Benammar-ElgaaiedLaboratory of Genetics, Immunology, and Human Pathologies, Faculty of Science of Tunis, University Tunis El Manar, Tunis, Tunisia.
Rene J HerreraBiology Department, Colorado College, Colorado Springs, CO, USA.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The male genetic landscape of the territory currently known as Tunisia is hampered by the scarcity of data, especially from cosmopolitan areas such as the coastal city of Sousse. In order to alleviate this lacuna, 220 males from Sousse were examined, for the first time, for more than 50 Y-chromosome single-nucleotide polymorphisms (Y-SNPs) markers and compared with 3099 individuals from key geographically targeted locations in North Africa, Europe and the Near East. The paternal lineages observed belong to a common set of Y haplogroups previously described in North Africa. In addition to the prominent autochthonous North African E-M81 haplogroup which is exclusively represented by its subclade E-M183 (44.55% of Y-chromosomes), a number of Near Eastern Neolithic lineages including E-M78, J-M267 and J-M172 account for 39% of the Y-chromosomes detected. Principal component analysis based on haplogroup frequencies, multidimensional scaling based on Rst genetic distances and analyses of molecular variance using both Y-chromosome short tandem repeat haplotypes and Y-SNP haplogroup data revealed that the Tunisian and North African groups, as a whole, are intra- and inter-specific diverse with Sousse being highly heterogeneous.

Indexed as

Genetic HeterogeneityPolymorphism, Single NucleotideAfrica, NorthernChromosomes, Human, YEuropeGenetics, PopulationHaplotypesHumansMaleMicrosatellite RepeatsMiddle EastPhylogenyTunisia

Identifiers

PMID25471516

What OpenQuestion holds

Textmetadata
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.