Evidence map›Paper›PMID 25471132›Full record

ArticleNature communications2014

Extrachromosomal driver mutations in glioblastoma and low-grade glioma.

Sergey Nikolaev, Federico Santoni, Marco Garieri, Periklis Makrythanasis, Emilie Falconnet, Michel Guipponi, Anne Vannier, Ivan Radovanovic, Frederique Bena, Françoise Forestier and 5 more

Open access · bronzeAbstract read
In one paragraph

Article in Nature communications, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 63 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
63citing papers in PubMed, 1 pooled it
1.7field-weighted citation impact, top 17% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

63 citing papers in PubMed, 1 synthesis or guideline pooled it, 93 citations in OpenAlex.

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  19. Extrachromosomal DNA amplifications in cancer.Nature reviews. Genetics · 2022
    Review
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3 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

15 authors at 2 institutions in 2 countries.

Sergey Nikolaev *Department of Genetic Medicine and Development. University of Geneva Medical School. 1 rue Michel Servet, 1211 Geneva 4, Switzerland.
Federico Santoni *Department of Genetic Medicine and Development. University of Geneva Medical School. 1 rue Michel Servet, 1211 Geneva 4, Switzerland.
Marco GarieriDepartment of Genetic Medicine and Development. University of Geneva Medical School. 1 rue Michel Servet, 1211 Geneva 4, Switzerland.
Periklis MakrythanasisDepartment of Genetic Medicine and Development. University of Geneva Medical School. 1 rue Michel Servet, 1211 Geneva 4, Switzerland.
Emilie FalconnetDepartment of Genetic Medicine and Development. University of Geneva Medical School. 1 rue Michel Servet, 1211 Geneva 4, Switzerland.
Michel GuipponiGeneva University Hospitals - HUG. Service of Genetic Medicine. 4 Rue Gabrielle-Perret-Gentil, 1211 Geneva 4, Switzerland.
Anne VannierGeneva University Hospitals - HUG. Service of Genetic Medicine. 4 Rue Gabrielle-Perret-Gentil, 1211 Geneva 4, Switzerland.
Ivan RadovanovicDepartment of Clinical Neuroscience. University of Geneva Medical School. 1 rue Michel Servet, 1211 Geneva 4, Switzerland.
Frederique BenaGeneva University Hospitals - HUG. Service of Genetic Medicine. 4 Rue Gabrielle-Perret-Gentil, 1211 Geneva 4, Switzerland.
Françoise ForestierGeneva University Hospitals - HUG. Service of Genetic Medicine. 4 Rue Gabrielle-Perret-Gentil, 1211 Geneva 4, Switzerland.
Karl SchallerDepartment of Clinical Neuroscience. University of Geneva Medical School. 1 rue Michel Servet, 1211 Geneva 4, Switzerland.
Valerie DutoitCenter of Oncology. Geneva University Hospitals - HUG. 4 Rue Gabrielle-Perret-Gentil, 1211, Geneva 4, Switzerland.
Virginie Clement-SchatloDepartment of Clinical Neuroscience. University of Geneva Medical School. 1 rue Michel Servet, 1211 Geneva 4, Switzerland.
Pierre-Yves DietrichCenter of Oncology. Geneva University Hospitals - HUG. 4 Rue Gabrielle-Perret-Gentil, 1211, Geneva 4, Switzerland.
Stylianos E AntonarakisDepartment of Genetic Medicine and Development. University of Geneva Medical School. 1 rue Michel Servet, 1211 Geneva 4, Switzerland.
Geneva College · USUniversity of Geneva · CH

Funding

European Research Council 249968
6 · The paper itself

Abstract

Alteration of the number of copies of double minutes (DMs) with oncogenic EGFR mutations in response to tyrosine kinase inhibitors is a novel adaptive mechanism of glioblastoma. Here we provide evidence that such mutations in DMs, called here amplification-linked extrachromosomal mutations (ALEMs), originate extrachromosomally and could therefore be completely eliminated from the cancer cells. By exome sequencing of seven glioblastoma patients we reveal ALEMs in EGFR, PDGFRA and other genes. These mutations together with DMs are lost by cancer cells in culture. We confirm the extrachromosomal origin of such mutations by showing that wild-type and mutated DMs may coexist in the same tumour. Analysis of 4,198 tumours suggests the presence of ALEMs across different tumour types with the highest prevalence in glioblastomas and low-grade gliomas. The extrachromosomal nature of ALEMs explains the observed drastic changes in the amounts of mutated oncogenes (like EGFR or PDGFRA) in glioblastoma in response to environmental changes.

Indexed as

Brain NeoplasmsDNA, CircularGene AmplificationGenomic InstabilityGlioblastomaGliomaHumansMutationNeoplasm GradingDNA, Circular

Identifiers

PMID25471132
PMCPMC4338529
OpenAlexW1985606337

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.