Evidence map›Paper›PMID 25470816›Full record

ArticlePloS one2014

Possible single-nucleotide polymorphism loci associated with systemic sclerosis susceptibility: a genetic association study in a Chinese Han population.

Chang Shu, Wei Du, Xiaofei Mao, Yun Li, Qin Zhu, Wei Wang, Nan Wu, Xuming Mao, Hongzhong Jin, Qiuning Sun

Open access · goldAbstract read
In one paragraph

Article in PloS one, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed, 1 pooled it
0.8field-weighted citation impact, top 26% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

5 citing papers in PubMed, 1 synthesis or guideline pooled it, 12 citations in OpenAlex.

  1. Pooled it
  2. Review
  3. Article
  4. Article
  5. Genetics of systemic sclerosis.Seminars in immunopathology · 2015
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 3 institutions in 2 countries.

Chang ShuDepartment of dermatology, Peking Union Medical College Hospital, Chinese Academy of Medical Sciences, Beijing (100005), China.
Wei DuDepartment of dermatology, Peking Union Medical College Hospital, Chinese Academy of Medical Sciences, Beijing (100005), China.
Xiaofei MaoDepartment of dermatology, Peking Union Medical College Hospital, Chinese Academy of Medical Sciences, Beijing (100005), China.
Yun LiDepartment of dermatology, Peking Union Medical College Hospital, Chinese Academy of Medical Sciences, Beijing (100005), China.
Qin ZhuDepartment of dermatology, Peking Union Medical College Hospital, Chinese Academy of Medical Sciences, Beijing (100005), China.
Wei WangDepartment of dermatology, Peking Union Medical College Hospital, Chinese Academy of Medical Sciences, Beijing (100005), China.
Nan WuDepartment of surgery, Peking Union Medical College Hospital, Chinese Academy of Medical Sciences, Beijing (100005), China.
Xuming MaoDepartment of Dermatology, University of Pennsylvania, Philadelphia, Pennsylvania, United States of America.
Hongzhong JinDepartment of dermatology, Peking Union Medical College Hospital, Chinese Academy of Medical Sciences, Beijing (100005), China.
Qiuning SunDepartment of dermatology, Peking Union Medical College Hospital, Chinese Academy of Medical Sciences, Beijing (100005), China.
Peking Union Medical College Hospital · CNChinese Academy of Medical Sciences & Peking Union Medical College · CNUniversity of Pennsylvania · US

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

objectiveThe aim of this study was to confirm the association of RHOB and FAM167A-BLK gene polymorphisms with susceptibility to systemic sclerosis (SSc) in a Chinese Han population.

methodsA total of 248 SSc patients and 251 healthy controls of Chinese Han ethnicity, which visited the department of dermatology of Peking Union Medical College Hospital, were included in the study. Six selected single nucleotide polymorphisms (SNPs) in the RHOB and FAM167A-BLK regions were selected as markers and were genotyped using a MassARRAY system, which is based on the matrix-assisted laser desorption/ionization time of flight mass spectrometry technique.

resultsThree SNPs in the coding regions of the RHOB and FAM167A-BLK genes displayed an association with SSc: (1) rs1062292T, which is a newly discovered SNP in the RHOB gene (P = 0.03, odds ratio [OR] = 1.62, 95% confidence interval (CI) = 1.05-2.50), (2) rs2736340T (P = 0.03, OR = 1.39, 95%CI = 1.03-1.85), and (3) rs13277113A (P = 0.04, OR = 1.34, 95%CI = 1.01-1.76), both in the FAM167A-BLK gene. Our results support previous findings that vaiants in the RHOB and FAM167A-BLK genes may be associated with susceptibility to SSc. However, the loci of the SNPs in RHOB region that displayed an association with SSc are quite different from the loci which were identified in studies of Caucasian populations.

conclusionOur results confirm that RHOB and FAM167A-BLK polymorphisms exist in Chinese Han SSc patients. Therefore, variants of the RHOB and FAM167A-BLK genes are promising genetic markers for SSc.

Indexed as

Polymorphism, Single NucleotideAdolescentAdultAgedAsian PeopleCase-Control StudiesChinaFemaleGenetic Association StudiesGenetic Predisposition to DiseaseHumansIntrinsically Disordered ProteinsMaleMiddle AgedProteinsrhoB GTP-Binding ProteinFAM167A protein, humanIntrinsically Disordered ProteinsProteinsrhoB GTP-Binding Protein

Identifiers

PMID25470816
PMCPMC4254283
OpenAlexW2078377777

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.