Evidence map›Paper›PMID 25470487›Full record

ArticlePloS one2014

Insights into molecular features of Venerupis decussata oocytes: a microarray-based study.

Marianna Pauletto, Massimo Milan, Joana Teixeira de Sousa, Arnaud Huvet, Sandra Joaquim, Domitília Matias, Alexandra Leitão, Tomaso Patarnello, Luca Bargelloni

Open access · goldAbstract read
In one paragraph

Article in PloS one, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
1.9field-weighted citation impact, top 13% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed, 23 citations in OpenAlex.

  1. Article
  2. Changes in phospholipid profiles in early larval stages of the marine musselInternational journal of biochemistry and molecular biology · 2023
    Article
  3. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 5 institutions in 4 countries.

Marianna PaulettoDepartment of Comparative Biomedicine and Food Science, University of Padova, Legnaro, Italy.
Massimo MilanDepartment of Comparative Biomedicine and Food Science, University of Padova, Legnaro, Italy.
Joana Teixeira de SousaIFREMER, Institut Français de Recherche pour l'Exploitation de la Mer, Laboratoire des Sciences de l'Environnement Marin, Plouzané, France; IPMA, Instituto Português do Mar e da Atmosfera, Olhão, Portugal.
Arnaud HuvetIFREMER, Institut Français de Recherche pour l'Exploitation de la Mer, Laboratoire des Sciences de l'Environnement Marin, Plouzané, France.
Sandra JoaquimIPMA, Instituto Português do Mar e da Atmosfera, Olhão, Portugal; CIIMAR, Interdisciplinary Centre of Marine and Environmental Research, University of Porto, Porto, Portugal.
Domitília MatiasIPMA, Instituto Português do Mar e da Atmosfera, Olhão, Portugal; CIIMAR, Interdisciplinary Centre of Marine and Environmental Research, University of Porto, Porto, Portugal.
Alexandra LeitãoIPMA, Instituto Português do Mar e da Atmosfera, Olhão, Portugal; Environmental Studies Center, Qatar University, Doha, Qatar.
Tomaso PatarnelloDepartment of Comparative Biomedicine and Food Science, University of Padova, Legnaro, Italy.
Luca BargelloniDepartment of Comparative Biomedicine and Food Science, University of Padova, Legnaro, Italy.
University of Padua · ITLaboratoire des Sciences de l'Environnement Marin · FRPortuguese Sea and Atmosphere Institute · PTQatar University · QAUniversidade do Porto · PT

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The production of Venerupis decussata relies on wild seed collection, which has been recently compromised due to recruitment failure and severe mortalities. To address this issue and provide an alternative source of seed, artificial spawning and larval rearing programs were developed. However, hatchery-based seed production is a relatively new industry and it is still underdeveloped. A major hurdle in the European clam seed production is the control of spawning and reproduction, which is further hindered by the impossibility of obtaining fertile gametes by gonadal "stripping", as meiosis re-initiation is constrained to a maturation process along the genital ducts. In the present study, oocytes were collected from 15 females and microarray analyses was performed to investigate gene expression profiles characterizing released and stripped ovarian oocytes. A total of 198 differentially expressed transcripts between stripped and spawned oocytes were detected. Functional analysis carried out on these transcripts highlighted the importance of a few biological processes, which are most probably implicated in the control of oocyte competence. Significant differences were observed for transcripts encoding proteins involved in meiosis progression (e.g. dual specificity phosphatase CDC25), WNT signalling (e.g. frizzled class receptor 8, wingless-type MMTV integration site family member 4), steroid synthesis (e.g. progestin and adipoQ receptor family member 3, cytochrome P450-C17), mRNA processing (e.g. zinc finger protein XlCOF28), calcium regulation (e.g. regucalcin, calmodulin) and ceramide metabolism (ceramidase B, sphingomyelinase). This study provides new information on transcriptional profiles putatively associated with ovarian egg infertility, and suggests potential mechanisms regulating early oocyte development in clams. Genes which were differentially expressed between stripped and spawned oocytes might have a pivotal role during maturation process in the gonadal duct and could be interesting targets for further functional studies aiming to make ovarian oocytes fertilizable.

Indexed as

Gene Expression ProfilingGene Expression Regulation, DevelopmentalAnimalsBivalviaFemaleGene OntologyOligonucleotide Array Sequence AnalysisOocytesPrincipal Component AnalysisWnt Signaling Pathway

Identifiers

PMID25470487
PMCPMC4254928
OpenAlexW2151749365

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.