Evidence map›Paper›PMID 25468349›Full record

ArticleBiophysical journal2014

Dual biochemical oscillators may control cellular reversals in Myxococcus xanthus.

Erik Eckhert, Padmini Rangamani, Annie E Davis, George Oster, James E Berleman

Abstract read
In one paragraph

Article in Biophysical journal, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed.

  1. Article
  2. Article
  3. Bacteria that glide with helical tracks.Current biology : CB · 2014
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors.

Erik EckhertUniversity of California, Berkeley/University of California, San Francisco Joint Medical Program, Berkeley, California; Department of Molecular and Cell Biology, University of California, Berkeley, Berkeley, California.
Padmini RangamaniDepartment of Mechanical and Aerospace Engineering, University of California, San Diego, La Jolla, California.
Annie E DavisDepartment of Molecular and Cell Biology, University of California, Berkeley, Berkeley, California.
George OsterDepartment of Molecular and Cell Biology, University of California, Berkeley, Berkeley, California.
James E BerlemanDepartment of Molecular and Cell Biology, University of California, Berkeley, Berkeley, California; Life Sciences Division, Lawrence Berkeley National Laboratory, Berkeley, California; Department of Biology, St. Mary's College, Moraga, California. Electronic address: jeb8@stmarys-ca.edu.

Funding

Mathematical models of membrane biophysics and microbial locomotionR01GM104979 · NIGMS · UNIVERSITY OF CALIFORNIA BERKELEY · PI RODERICK, GEORGE KARLSSON · 2012 to 2014
$538k
NIGMS NIH HHS R01 GM104979NIGMS NIH HHS R01GM104979
6 · The paper itself

Abstract

Myxococcus xanthus is a Gram-negative, soil-dwelling bacterium that glides on surfaces, reversing direction approximately once every 6 min. Motility in M. xanthus is governed by the Che-like Frz pathway and the Ras-like Mgl pathway, which together cause the cell to oscillate back and forth. Previously, Igoshin et al. (2004) suggested that the cellular oscillations are caused by cyclic changes in concentration of active Frz proteins that govern motility. In this study, we present a computational model that integrates both the Frz and Mgl pathways, and whose downstream components can be read as motor activity governing cellular reversals. This model faithfully reproduces wildtype and mutant behaviors by simulating individual protein knockouts. In addition, the model can be used to examine the impact of contact stimuli on cellular reversals. The basic model construction relies on the presence of two nested feedback circuits, which prompted us to reexamine the behavior of M. xanthus cells. We performed experiments to test the model, and this cell analysis challenges previous assumptions of 30 to 60 min reversal periods in frzCD, frzF, frzE, and frzZ mutants. We demonstrate that this average reversal period is an artifact of the method employed to record reversal data, and that in the absence of signal from the Frz pathway, Mgl components can occasionally reverse the cell near wildtype periodicity, but frz- cells are otherwise in a long nonoscillating state.

Indexed as

Models, BiologicalBacterial ProteinsGene Knockout TechniquesMutationMyxococcus xanthusPhenotypeBacterial Proteins

Identifiers

PMID25468349
PMCPMC4255590

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.