Evidence map›Paper›PMID 25467501›Full record

ArticleAnalytica chimica acta2015

Combination of multiplex reverse-transcription loop-mediated isothermal amplification with an immunochromatographic strip for subtyping influenza A virus.

Jae Hwan Jung, Seung Jun Oh, Yong Tae Kim, So Yeon Kim, Won-Jung Kim, Jaean Jung, Tae Seok Seo

Abstract read
In one paragraph

Article in Analytica chimica acta, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 23 papers.

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0cells of the map it votes in
23citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

23 citing papers in PubMed.

  1. Review
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  4. Advances in Detection Techniques for the H5N1 Avian Influenza Virus.International journal of molecular sciences · 2023
    Review
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors.

Jae Hwan JungDepartment of Chemical and Biomolecular Engineering (BK21+ Program) and Institute for the BioCentury, Korea Advanced Institute of Science and Technology (KAIST), 291 Daehak-ro, Yuseong-gu, Daejeon 305-701, Republic of Korea. Electronic address: jjaehwan@kaist.ac.kr.
Seung Jun OhDepartment of Chemical and Biomolecular Engineering (BK21+ Program) and Institute for the BioCentury, Korea Advanced Institute of Science and Technology (KAIST), 291 Daehak-ro, Yuseong-gu, Daejeon 305-701, Republic of Korea. Electronic address: osj237@kaist.ac.kr.
Yong Tae KimDepartment of Chemical and Biomolecular Engineering (BK21+ Program) and Institute for the BioCentury, Korea Advanced Institute of Science and Technology (KAIST), 291 Daehak-ro, Yuseong-gu, Daejeon 305-701, Republic of Korea. Electronic address: surpass7@kaist.ac.kr.
So Yeon KimMedisensor GH, Inc., 155-1 Nongso-ri, Juchon-myeon, Gimhae-si, Gyeongsangnam-do 621-841, Republic of Korea. Electronic address: sykim@medi-sensor.com.
Won-Jung KimMedisensor GH, Inc., 155-1 Nongso-ri, Juchon-myeon, Gimhae-si, Gyeongsangnam-do 621-841, Republic of Korea. Electronic address: wjkim@medi-sensor.com.
Jaean JungMedisensor GH, Inc., 155-1 Nongso-ri, Juchon-myeon, Gimhae-si, Gyeongsangnam-do 621-841, Republic of Korea. Electronic address: jj@medi-sensor.com.
Tae Seok SeoDepartment of Chemical and Biomolecular Engineering (BK21+ Program) and Institute for the BioCentury, Korea Advanced Institute of Science and Technology (KAIST), 291 Daehak-ro, Yuseong-gu, Daejeon 305-701, Republic of Korea. Electronic address: seots@kaist.ac.kr.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Considering the fatal human victims and economic loss by the annual epidemic influenza virus, the development of a rapid and convenient genetic analysis methodology is demanding for timely on-site pathogen detection. In this study, we utilized reverse-transcription loop-mediated isothermal amplification (RT-LAMP) for multiplex target gene amplification, and the resultant amplicons were analyzed on the immunochromatographic strip (ICS) for subtyping influenza A virus. Through the optimized primer design, reaction temperature and time, and concentration of enzymes (Bst DNA polymerase and AMV reverse transcriptase) and dNTP, the HA (H1, H3, and H5 gene) and conserved M gene were amplified. The ICS contains two test lines in addition to a control line in order to detect the presence of the HA and M gene, thereby informing us of influenza virus A type as well as its subtype (H1N1, H3N2, and H5N1). The combination of the multiplex RT-LAMP with the ICS could be complete in 40 min and the pathotyping and subtyping of influenza A virus were performed even with 10 copies of viral RNA templates. Moreover, the subtyping of clinical samples, which were obtained from patients infected by influenza A virus was successfully confirmed using the multiplex RT-LAMP and ICS techniques, showing great feasibility of our methodology for real sample analysis with high speed, simplicity and sensitivity.

Indexed as

Chromatography, AffinityNucleic Acid Amplification TechniquesBase SequenceColorimetryElectrophoresis, Agar GelHumansInfluenza A virusInfluenza A Virus, H1N1 SubtypeInfluenza A Virus, H3N2 SubtypeInfluenza A Virus, H5N1 SubtypeInfluenza, HumanMolecular Sequence DataRNA, ViralRNA, ViralImmunochromatographic stripInfluenza A virusMultiplex reverse transcription loop-mediated isothermal amplificationSubtyping

Identifiers

PMID25467501
PMCPMC7094724

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.