Evidence map›Paper›PMID 25467183›Full record

ArticleGenetics2015

Variation in crossover frequencies perturb crossover assurance without affecting meiotic chromosome segregation in Saccharomyces cerevisiae.

Gurukripa N Krishnaprasad, Mayakonda T Anand, Gen Lin, Manu M Tekkedil, Lars M Steinmetz, Koodali T Nishant

Open access · bronzeAbstract read
In one paragraph

Article in Genetics, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 19 papers.

0numbers the graph read from it
0cells of the map it votes in
19citing papers in PubMed
1.3field-weighted citation impact, top 20% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

19 citing papers in PubMed, 33 citations in OpenAlex.

  1. Article
  2. Article
  3. ThePNAS nexus · 2023
    Article
  4. Article
  5. Article
  6. Diffusion and distal linkages govern interchromosomal dynamics during meiotic prophase.Proceedings of the National Academy of Sciences of the United States of America · 2022
    Article
  7. Article
  8. Article
  9. Article
  10. Review
  11. Article
  12. Review
  13. Article
  14. Low recombination rates in sexual species and sex-asex transitions.Philosophical transactions of the Royal Society of London. Series B, Biological sciences · 2017
    Article
  15. Genome Dynamics of HybridG3 (Bethesda, Md.) · 2017
    Article
  16. Article
  17. Article
  18. Evolutionary mysteries in meiosis.Philosophical transactions of the Royal Society of London. Series B, Biological sciences · 2016
    Review
  19. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 2 institutions in 3 countries.

Gurukripa N KrishnaprasadSchool of Biology, Indian Institute of Science Education and Research, Thiruvananthapuram, Trivandrum 695016, India.
Mayakonda T AnandSchool of Biology, Indian Institute of Science Education and Research, Thiruvananthapuram, Trivandrum 695016, India.
Gen LinEuropean Molecular Biology Laboratory, Genome Biology Unit, 69117, Heidelberg, Germany.
Manu M TekkedilEuropean Molecular Biology Laboratory, Genome Biology Unit, 69117, Heidelberg, Germany.
Lars M SteinmetzEuropean Molecular Biology Laboratory, Genome Biology Unit, 69117, Heidelberg, Germany Department of Genetics, Stanford University, Stanford, California 94305 Stanford Genome Technology Center, Palo Alto, California 94304.
Koodali T NishantSchool of Biology, Indian Institute of Science Education and Research, Thiruvananthapuram, Trivandrum 695016, India nishantkt@iisertvm.ac.in.
European Molecular Biology Laboratory · DEIndian Institute of Science Education and Research Thiruvananthapuram · IN

Funding

Wellcome Trust
6 · The paper itself

Abstract

The segregation of homologous chromosomes during the Meiosis I division requires an obligate crossover per homolog pair (crossover assurance). In Saccharomyces cerevisiae and mammals, Msh4 and Msh5 proteins stabilize Holliday junctions and its progenitors to facilitate crossing over. S. cerevisiae msh4/5 hypomorphs that reduce crossover levels up to twofold at specific loci on chromosomes VII, VIII, and XV without affecting homolog segregation were identified recently. We use the msh4-R676W hypomorph to ask if the obligate crossover is insulated from variation in crossover frequencies, using a S. cerevisiae S288c/YJM789 hybrid to map recombination genome-wide. The msh4-R676W hypomorph made on average 64 crossovers per meiosis compared to 94 made in wild type and 49 in the msh4Δ mutant confirming the defect seen at individual loci on a genome-wide scale. Crossover reductions in msh4-R676W and msh4Δ were significant across chromosomes regardless of size, unlike previous observations made at specific loci. The msh4-R676W hypomorph showed reduced crossover interference. Although crossover reduction in msh4-R676W is modest, 42% of the four viable spore tetrads showed nonexchange chromosomes. These results, along with modeling of crossover distribution, suggest the significant reduction in crossovers across chromosomes and the loss of interference compromises the obligate crossover in the msh4 hypomorph. The high spore viability of the msh4 hypomorph is maintained by efficient segregation of the natural nonexchange chromosomes. Our results suggest that variation in crossover frequencies can compromise the obligate crossover and also support a mechanistic role for interference in obligate crossover formation.

Indexed as

Chromosome SegregationChromosomes, FungalCrossing Over, GeneticMeiosisGenetic VariationHigh-Throughput Nucleotide SequencingMicrobial ViabilityMutationSaccharomyces cerevisiaeSaccharomyces cerevisiae ProteinsSpores, FungalSaccharomyces cerevisiae Proteinscrossover assurancegenome-wide recombination mapnonexchange chromosomesobligate crossoverwhole-genome sequencing

Identifiers

PMID25467183
PMCPMC4317650
OpenAlexW2117421302

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.